YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1778.03c
Organism:	Schizosaccharomyces pombe
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1778.03c.

Description	E-value	Query Range	Subject Range
NUD12_MOUSE - Peroxisomal NADH pyrophosphatase NUDT12 OS=Mus musculus GN=Nudt12 PE=1 SV=1	277.0	[0..15]	[365..116]
NUDT12 - nudix (nucleoside diphosphate linked moiety X)-type motif 12 gi\|117646588 - gi\|117646588\|emb\|CAL37409.1\| hypothetical protein [synthetic construct]	271.0	[0..14]	[366..115]
gi\|114601054 - gi\|114601054\|ref\|XP_517859.2\| PREDICTED: hypothetical protein [Pan troglodytes]	270.0	[0..14]	[366..227]
NUD12_PONAB - Peroxisomal NADH pyrophosphatase NUDT12 OS=Pongo abelii GN=NUDT12 PE=2 SV=1 NUD12_PONPY - Peroxisomal NADH pyrophosphatase NUDT12 - Pongo pygmaeus (Orangutan)	268.0	[0..14]	[366..115]
gi\|109078130 - gi\|109078130\|ref\|XP_001099246.1\| PREDICTED: similar to nudix -type motif 12 [Macaca mulatta]	268.0	[0..14]	[366..115]
NUD12_MACFA - Peroxisomal NADH pyrophosphatase NUDT12 OS=Macaca fascicularis GN=NUDT12 PE=2 SV=1	267.0	[0..14]	[366..115]
gi\|73952237 - gi\|73952237\|ref\|XP_545998.2\| PREDICTED: similar to nudix -type motif 12 [Canis familiaris]	266.0	[0..14]	[365..114]
gi\|149037415, gi... - gi\|157823879\|ref\|NP_001102480.1\| nudix-type motif 12 [Rattus norvegicus], gi\|149037415\|gb\|EDL91846.1...	264.0	[0..16]	[365..117]
NUD12_BOVIN - Peroxisomal NADH pyrophosphatase NUDT12 OS=Bos taurus GN=NUDT12 PE=2 SV=1	260.0	[0..14]	[365..97]

Back

Predicted Domain #1

Region A:
Residues: [1-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGFKIARHF ELPTAPSQFF AGSSLNRLSF LRSNREFLNK AFYDHTTRFL PFCDLNPALL  60
   61 VKDDKLVTLS YPQISKYFTF SPFEHTDKQI AERFSKGESL PVLVYMGNEE RNGPTDNWSQ 120
  121 HNVFAIDITG IDELQQSIRD NGGTFVNLRS IFTEQYQLSA SDSGACAFAR SILDWISRYR 180
  181 FCPGCGKRNI PTMGGTKLVC SDVLLNDDSN CPSKKGINNY QYPRTDPCVI MVILSHDMQH 240
  241 ILLGRALRHP KGLYACLAGF LEPGESLEEA VVRETYEESG VDVEKVLYYA SQPWPFPQSL 300
  301 MLACFGIARK NAKIQRDKDL ELEDVRFFSR EEVLRSLEWD AKDGPAPILF PPKLSIARNL 360
  361 IQAFAYDDWT NSQVKM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	1vk6A
Description:	Crystal structure of NADH pyrophosphatase (1790429) from Escherichia coli k12 at 2.20 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits