YRC Public Data Repository - Protein Structure Prediction

Protein:	msp1
Organism:	Schizosaccharomyces pombe
Length:	903 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for msp1.

Description	E-value	Query Range	Subject Range
gi\|7490516, gi\|2... - pir\|\|JE0327 dynamin-related protein MSP1 - fission yeast (Schizosaccharomyces pombe), gi\|2231082\|em...	753.0	[0..1]	[903..1]
gi\|70995616, gi\|... - gi\|70995616\|ref\|XP_752563.1\| mitochondrial dynamin GTPase (Msp1) [Aspergillus fumigatus Af293], gi\|6... gi\|159131318 - gi\|159131318\|gb\|EDP56431.1\| mitochondrial dynamin GTPase (Msp1), putative [Aspergillus fumigatus A11...	623.0	[0..27]	[901..13]
gi\|169768832 - gi\|169768832\|ref\|XP_001818886.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83766744 - gi\|83766744\|dbj\|BAE56884.1\| unnamed protein product [Aspergillus oryzae]	601.0	[0..27]	[901..13]
gi\|157071193, gi... - gi\|164426086\|ref\|XP_960772.2\| hypothetical protein NCU01255 [Neurospora crassa OR74A], gi\|157071193\|... gi\|28950313 - gi\|28950313\|emb\|CAD70843.1\| related to dynamin-like protein [Neurospora crassa]	600.0	[0..31]	[903..12]
gi\|46126151, gi\|... - gi\|46126151\|ref\|XP_387629.1\| hypothetical protein FG07453.1 [Gibberella zeae PH-1], gi\|42554627\|gb\|E...	597.0	[0..31]	[896..69]
gi\|115491707, gi... - gi\|115491707\|ref\|XP_001210481.1\| protein MGM1, mitochondrial precursor [Aspergillus terreus NIH2624]...	595.0	[0..27]	[896..13]
gi\|67517829, gi\|... - gi\|67517829\|ref\|XP_658697.1\| hypothetical protein AN1093.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	573.0	[0..27]	[896..13]
gi\|41581272 - gi\|41581272\|emb\|CAE47921.1\| dynamin-related protein, putative [Aspergillus fumigatus]	570.0	[0..79]	[901..18]
gi\|119174070, gi... - gi\|90298182\|gb\|EAS27813.1\| hypothetical protein CIMG_09017 [Coccidioides immitis RS], gi\|119174070\|r...	556.0	[0..23]	[897..26]
MGM1 - Mitochondrial GTPase related to dynamin, present in a complex containing Ugo1p and Fzo1p; required f...	550.0	[0..21]	[898..24]

Back

Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISWFLSRF RIRTVAPSSF LKPRGLVYRP SQIRRRVSLL SLSGFHPYRA YSILGPKTPT  60
   61 AFNSANTVRF FSFSSISRLV FRSLRLPVAG FSLVAGGAAY IGAQVQRASD YTKDIFDKTF 120
  121 GILDSTWEKT RETVASVTNV QLPEISMPLW LEKILRLDEE SAERRRVLQA ERAKEHRSNS 180
  181 NDKQKSSDND EDPNDTTVGI GAALAASILS VDSVDGEDT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [220-554]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTADEKRKLA QESKEDRMML FTKKMIEIRN ILQDIQDNNS AVTLPSIVVI GSQSSGKSSV  60
   61 LEAIVGHEFL PKGSNMVTRR PIELTLVHSA DTAIPYGEFS GVQLGKITDF SKIQHILTDL 120
  121 NMAVPSSQGV DDNPIRLTIY ASHIPNLSLI DLPGYIQIHS EDQPADLDMK ISKLCEKYIR 180
  181 EPNIILAVCA ADVDLANSAA LRASRRVDPL GLRTIGVVTK MDLVPPSKAI SILHNNNYPL 240
  241 HYGYIGVISR IVPTGRFSAG QNLTDLVSTQ ENSYFSTHQQ FADARIGNYL GIQSLRKCLI 300
  301 NVLEYTMSKN LQHTADSIRT ELEECNYQYK VQYND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.154902
Match:	1jwyB
Description:	Dynamin G domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [555-756]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVLTADSYIA EGLDIFKAAF KEFTQKFGKS EVRDLLKSSL NEKVMDLLAE RYWTDDDISN  60
   61 WSKHTNALDE HWKYKLDSCV STLTRMGLGR VSTLLVTDSI SKCIDEITKA SPFADHPAAM 120
  121 QYIMNAAQDI LRRRFHATSE QVENCVKPYK YDVEVNDDEW KSSRGQAEKL LQRELGLCQS 180
  181 ALEKIKNAVG SRRMNQVLQY LE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [757-903]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQKTSSEPLP ASYSTALLEQ GRMLQYLKMR EDILKLRISV LKSRACKHKE AKYTCPEIFL  60
   61 NAVSDKLVNT AVLFINIELL SEFYYQFPRE LDQRLIHSLS SEQLNAFVNE NPRLKSQLQL 120
  121 QHKRQCLELA LQKINSLVIL EQQADSD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.870	N/A	N/A	a.118.26	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits