YRC Public Data Repository - Protein Structure Prediction

Protein:	mal3
Organism:	Schizosaccharomyces pombe
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mal3.

Description	E-value	Query Range	Subject Range
gi\|109102362 - gi\|109102362\|ref\|XP_001088113.1\| PREDICTED: similar to dihydropyrimidinase-like 5 [Macaca mulatta]	386.0	[0..2]	[264..791]
gi\|12751131 - gi\|12751131\|gb\|AAK07557.1\| EBF3-S [Homo sapiens]	372.0	[0..2]	[264..16]
gi\|54697000 - gi\|54697000\|gb\|AAV38872.1\| microtubule-associated protein, RP/EB family, member 3 [synthetic constru...	371.0	[0..2]	[264..14]
tr\|M3WZ03\|M3WZ03... - Microtubule associated protein RP/EB family member 3 OS=Felis catus GN=MAPRE3 PE=4 SV=1 gi\|73979904, gi\|... - gi\|73979906\|ref\|XP_860135.1\| PREDICTED: similar to microtubule-associated protein, RP/EB family, mem... gi\|115496332, gi... - gi\|76630041\|ref\|XP_885997.1\| PREDICTED: similar to microtubule-associated protein, RP/EB family, mem...	370.0	[0..2]	[264..14]
MARE1_XENTR - Microtubule-associated protein RP/EB family member 1 OS=Xenopus tropicalis GN=mapre1 PE=2 SV=1	369.0	[0..2]	[260..14]
MARE3_RAT - Microtubule-associated protein RP/EB family member 3 OS=Rattus norvegicus GN=Mapre3 PE=1 SV=1 tr\|G3GXR7\|G3GXR7... - Microtubule-associated protein RP/EB family member 3 OS=Cricetulus griseus GN=I79_002559 PE=4 SV=1 MARE3_MOUSE - Microtubule-associated protein RP/EB family member 3 OS=Mus musculus GN=Mapre3 PE=1 SV=1	369.0	[0..2]	[264..14]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESRQELLA WINQVTSLGL TRIEDCGKGY AMIQIFDSIY QDIPLKKVNF ECNNEYQYIN  60
   61 NWKVLQQVFL KKGIDKVVDP ERLSRCKMQD NLEFVQWAKR FWDQYYPGGD YDALARRGNR 120
  121 GPANTRVM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1wyoA
Description:	Solution structure of the CH domain of human microtubule-associated protein RP/EB family member 3
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [129-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSAGATGPS RRRQVSSGSS TPSMTKSSAN NNNVSSTANT AAVLRAKQAQ QQITSLETQL  60
   61 YEVNETMFGL ERERDFYFNK LREIEILVQT HLTTSPMSME NMLERIQAIL YSTEDGFELP 120
  121 PDQPADLTTA LTDHDTNNVA EEAQMTDLKD SETQRVPSAP DFVHARLQSL EVDDDENITF 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1txqB
Description:	Crystal structure of the EB1 C-terminal domain complexed with the CAP-Gly domain of p150Glued
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits