YRC Public Data Repository - Protein Structure Prediction

Protein:	cpc2
Organism:	Schizosaccharomyces pombe
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cpc2.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	337.0	[0..8]	[313..1165]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	326.0	[0..4]	[313..1147]
gi\|17225206 - gi\|17225206\|gb\|AAL37299.1\|AF323583_1 beta transducin-like protein HET-E2C*4 [Podospora anserina]	322.0	[0..4]	[311..914]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	322.0	[0..4]	[313..1285]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	318.0	[0..4]	[311..852]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEQLVLRAT LEGHSGWVTS LSTAPENPDI LLSGSRDKSI ILWNLVRDDV NYGVAQRRLT  60
   61 GHSHFVSDCA LSFDSHYALS ASWDKTIRLW DLEKGECTHQ FVGHTSDVLS VSISPDNRQV 120
  121 VSGSRDKTIK IWNIIGNCKY TITDGGHSDW VSCVRFSPNP DNLTFVSAGW DKAVKVWDLE 180
  181 TFSLRTSHYG HTGYVSAVTI SPDGSLCASG GRDGTLMLWD LNESTHLYSL EAKANINALV 240
  241 FSPNRYWLCA ATGSSIRIFD LETQEKVDEL TVDFVGVGKK SSEPECISLT WSPDGQTLFS 300
  301 GWTDNLIRVW QVTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	1trjA
Description:	Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits