YRC Public Data Repository - Protein Structure Prediction

Protein:	fib1
Organism:	Schizosaccharomyces pombe
Length:	305 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fib1.

Description	E-value	Query Range	Subject Range
gi\|74226877 - gi\|74226877\|dbj\|BAE27083.1\| unnamed protein product [Mus musculus]	357.0	[0..68]	[302..87]
gi\|30583881, gi\|... - gi\|60653881\|gb\|AAX29633.1\| fibrillarin [synthetic construct], gi\|30583881\|gb\|AAP36189.1\| Homo sapien...	356.0	[0..68]	[302..81]
FBRL_RAT - rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus GN=Fbl PE=1 SV=2	355.0	[0..67]	[302..86]
gi\|114677245 - gi\|114677245\|ref\|XP_001140257.1\| PREDICTED: similar to Fibrillarin isoform 3 [Pan troglodytes]	355.0	[0..68]	[302..44]
gi\|73948346 - gi\|73948346\|ref\|XP_533671.2\| PREDICTED: similar to fibrillarin [Canis familiaris]	355.0	[0..68]	[302..73]
gi\|114677237 - gi\|114677237\|ref\|XP_512658.2\| PREDICTED: similar to Fibrillarin isoform 7 [Pan troglodytes] gi\|123982998, gi... - gi\|61362175\|gb\|AAX42172.1\| fibrillarin [synthetic construct], gi\|61357380\|gb\|AAX41379.1\| fibrillarin... FBL - fibrillarin	355.0	[0..68]	[302..81]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYTPGSRGG RGGSRGGRGG FNGGRGGFGG GRGGARGGGR GGARGGRGGR GGARGGRGGS  60
   61 SGGRGGAK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-305]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGAKVIIEPH RHAGVFIARG KEDLLVTRNL VPGESVYNEK RISVDSPDGT KVEYRVWNPF  60
   61 RSKLAAGILG GLDNIYIKPG ARVLYLGAAN GTSVSHVADV VGPEGLVYAV EFSHRSGRDL 120
  121 LNMAKKRTNV IPIVEDARHV QKYRMLVGMV DVVFADVAQP DQARIVALNA AAFLKNEGGV 180
  181 VISVKASCID STADAAVVFA REVKKMQEEK IKPQEQLTLE PYERDHCIIV GKYLRHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.30103
Match:	2ipxA
Description:	No description for 2ipxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits