YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC20G8.04c
Organism:	Schizosaccharomyces pombe
Length:	632 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC20G8.04c.

Description	E-value	Query Range	Subject Range
gi\|116202169, gi... - gi\|88177487\|gb\|EAQ84955.1\| hypothetical protein CHGG_08969 [Chaetomium globosum CBS 148.51], gi\|1162...	427.0	[0..1]	[632..1]
gi\|91784437, gi\|... - gi\|91784437\|ref\|YP_559643.1\| electron transferring flavoprotein-ubiquinone oxidoreductase [Burkholde...	423.0	[0..85]	[629..12]
gi\|149048291, gi... - gi\|52138635\|ref\|NP_942037.2\| electron-transferring-flavoprotein dehydrogenase [Rattus norvegicus], g...	422.0	[0..35]	[630..16]
ETFD_BOVIN - Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Bos taurus GN=ETFDH PE=2 ...	421.0	[0..53]	[630..32]
gi\|254297853, gi... - gi\|83678970\|ref\|ZP_00940689.1\| hypothetical protein Bpse4_01001925 [Burkholderia pseudomallei 406e],... gi\|67737827 - gi\|67737827\|ref\|ZP_00488559.1\| COG0644: Dehydrogenases (flavoproteins) [Burkholderia pseudomallei 66... gi\|85064750 - gi\|85064750\|ref\|ZP_01025603.1\| COG0644: Dehydrogenases (flavoproteins) [Burkholderia mallei 10229] gi\|148027574, gi... - gi\|87314081\|ref\|ZP_01095138.1\| COG0644: Dehydrogenases (flavoproteins) [Burkholderia mallei 20027212... gi\|76579590, gi\|... - gi\|76810137\|ref\|YP_333270.1\| electron transfer flavoprotein-ubiquinone oxidoreductase [Burkholderia ... gi\|194314351, gi... - gi\|254178688\|ref\|ZP_04885343.1\| putative electron transfer flavoprotein-ubiquinone oxidoreductase [B... gi\|243061258, gi... - gi\|243061258\|gb\|EES43444.1\| putative electron transfer flavoprotein-ubiquinone oxidoreductase [Burkh... gi\|225928295, gi... - gi\|226199709\|ref\|ZP_03795262.1\| electron-transferring-flavoprotein dehydrogenase [Burkholderia pseud... gi\|167719871 - gi\|167719871\|ref\|ZP_02403107.1\| electron transfer flavoprotein-ubiquinone oxidoreductase [Burkholder... gi\|238562612, gi... - gi\|238562612\|ref\|ZP_00440163.2\| electron-transferring-flavoprotein dehydrogenase [Burkholderia malle... gi\|52209987, gi\|... - gi\|53719573\|ref\|YP_108559.1\| putative electron transport protein [Burkholderia pseudomallei K96243],... gi\|194525337, gi... - gi\|254199751\|ref\|ZP_04906117.1\| putative electron transfer flavoprotein-ubiquinone oxidoreductase [B... gi\|53725261, gi\|... - gi\|53725261\|ref\|YP_102804.1\| electron transfer flavoprotein-ubiquinone oxidoreductase, putative [Bur... gi\|121599621, gi... - gi\|121599621\|ref\|YP_992884.1\| putative electron transfer flavoprotein-ubiquinone oxidoreductase [Bur... gi\|126448681, gi... - gi\|126448681\|ref\|YP_001080504.1\| putative electron transfer flavoprotein-ubiquinone oxidoreductase [... gi\|124292197, gi... - gi\|124384177\|ref\|YP_001026221.1\| putative electron transfer flavoprotein-ubiquinone oxidoreductase [... gi\|254206075, gi... - gi\|254206075\|ref\|ZP_04912427.1\| putative electron transfer flavoprotein-ubiquinone oxidoreductase [B...	419.0	[0..85]	[629..12]
ETFD_MOUSE - Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Mus musculus GN=Etfdh PE=...	419.0	[0..35]	[630..16]
gi\|99910070, gi\|... - gi\|99910070\|ref\|ZP_01317133.1\| hypothetical protein Bpse1_03003450 [Burkholderia pseudomallei 1655],...	419.0	[0..85]	[629..12]

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Predicted Domain #1

Region A:
Residues: [1-632]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYLSRSALA RSVGAKHLTG VLRKIGRRGG RSMHVLPLAS PSTLLKISSQ TLRQDFTVLG  60
   61 ARNFHSSSVR LNELTDNLRK LDTIEREVED VDVCIVGAGP AGLSAAIRIK QQAAKANRDI 120
  121 RVVVLEKAAE PGNHSVSGAV IQPTALDELL PNWRDDPPEN CTAVTHDKMK FLIPKLHFPI 180
  181 PVPPAMKNHG NYVMSLAEFT RWLAAKAEEY GVEIYPSFAA SEVLYNKDGS VIGVATNDFG 240
  241 VDSKGLPKDN FERGMAFHAP VTLFAEGAHG SLSKSIIKRF NLRGNCEPQT YGLGVKEVWR 300
  301 VPDENFRKGE VAHTLGWPMR NDTYGGGFMY QFGDNYVTVG LVVGLDYPNP YVSPALEFQR 360
  361 MKQNPFFAKV LKGGKCLEYA ARALNEGGYQ AIPKLVFPGG ALIGCSAGFV NVAKIKGTHT 420
  421 AMKSGIVAAD AIVDAFGRDA ASKPLLLNDY EENLKNTYVF KELYSVRNIR PSFHSFLGNY 480
  481 GGMAYSAVEA YVLKGRVPWT LKHKGGDAKA TKSASKYKPI NYPKPDNVLS FDIPTSVSRS 540
  541 ATMHAENQPC HLFDHRPKDR KSCFETYKGV ENKFCPAGVY EYVNDEASSY GKRFVINSQN 600
  601 CVHCKTCDIK DPLQGIQWKT PQGGDGPKYT LT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	2gmhA
Description:	No description for 2gmhA was found.

Predicted functions:

Term	Confidence	Notes
NADH dehydrogenase activity	6.5929955386305	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	6.45562261241375	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	6.34963309803617	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	5.69483449389334	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	3.91001933271643	bayes_pls_golite062009
electron carrier activity	3.21957528314564	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	3.11137503143637	bayes_pls_golite062009
oxidoreductase activity	3.10483430063263	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	3.04960158864768	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor	3.0400550620086	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.87261684242536	bayes_pls_golite062009
formate dehydrogenase activity	2.79579164562277	bayes_pls_golite062009
electron-transferring-flavoprotein dehydrogenase activity	2.1276770745496	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.45104542724719	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	1.35744482443829	bayes_pls_golite062009
transporter activity	1.2818063852101	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	1.08975609376408	bayes_pls_golite062009
transmembrane transporter activity	1.07293152484928	bayes_pls_golite062009
binding	0.850925220183928	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.69501605197281	bayes_pls_golite062009
substrate-specific transporter activity	0.556967966402473	bayes_pls_golite062009
catalytic activity	0.488483980994331	bayes_pls_golite062009
metal cluster binding	0.484911132627709	bayes_pls_golite062009
iron-sulfur cluster binding	0.484911132627709	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.31459693204333	bayes_pls_golite062009
active transmembrane transporter activity	0.301257942260531	bayes_pls_golite062009
nucleic acid binding	0.162130833238942	bayes_pls_golite062009
protein binding	0.122045589752402	bayes_pls_golite062009
NADPH-adrenodoxin reductase activity	0.10059033442163	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	0.0827182678048914	bayes_pls_golite062009
primary active transmembrane transporter activity	0.0724852054074128	bayes_pls_golite062009
DNA binding	0.022476246602636	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: