YRC Public Data Repository - Protein Structure Prediction

Protein:	elf1
Organism:	Schizosaccharomyces pombe
Length:	1057 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for elf1.

Description	E-value	Query Range	Subject Range
gi\|32416300, gi\|... - gi\|32416300\|ref\|XP_328628.1\| hypothetical protein [Neurospora crassa], gi\|28924044\|gb\|EAA33202.1\| el... gi\|85107753 - gi\|85107753\|ref\|XP_962438.1\| elongation factor 3 [Neurospora crassa OR74A]	372.0	[0..7]	[1057..1]
gi\|283393, gi\|2521 - pir\|\|S25363 translation elongation factor eEF-3 - yeast (Candida albicans), gi\|2521\|emb\|CAA78282.1\| ... gi\|238882561 - gi\|238882561\|gb\|EEQ46199.1\| elongation factor 3 [Candida albicans WO-1]	364.0	[0..9]	[989..4]
orf19.11629 - CEF3 CGDID:CAL0005746 Assembly 19, Contig19-20198 (36268, 33116) CDS, reverse complemented, translat... gi\|68489571, gi\|... - gi\|68489571\|ref\|XP_711404.1\| translation elongation factor 3 [Candida albicans SC5314], gi\|46432703\|...	364.0	[0..9]	[989..4]
EF3_CANGA - Elongation factor 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-... EF3_CANGA - Elongation factor 3 OS=Candida glabrata GN=TEF3 PE=3 SV=2	358.0	[0..11]	[1025..3]
gi\|3786314 - gi\|3786314\|dbj\|BAA33959.1\| translation elongation factor3 [Candida glabrata]	358.0	[0..11]	[1025..3]
YEF3 - Translational elongation factor 3, stimulates the binding of aminoacyl-tRNA (AA-tRNA) to ribosomes b... EF3A_YEAST - Elongation factor 3A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEF3 PE=1 SV=4	357.0	[0..10]	[1025..2]
gi\|116196752, gi... - gi\|88180887\|gb\|EAQ88355.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	356.0	[0..10]	[1057..2]

Back

Predicted Domain #1

Region A:
Residues: [1-1057]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSVLIQGY EEDDVLKLLQ ELLDAETSQS CADVGKKIAQ LFSNDNPLVT LKTTGFLDGL  60
   61 ERAARNKKSG FHREAAMIGF ATVIKNLGTP SEVVFLPYLP TILDSFSDRG EVVRQAAKMA 120
  121 AQALLDCLPA GAVETRLIPS LISYLDDSSI KWPSKVAALQ LLGSLASSSP KAVADYMAAL 180
  181 IPCIKERMHD TKPEISRAAI TCMLNLCSVV ENNDIIPHIP KLVDCMAHPE TLEACIKDLS 240
  241 ATTFVATVES VALAVLVPIL KRALAQRSQS MLRLTVIITD NLCKLVPDPA EASDFLPELI 300
  301 PDVERIAQTA AMPEVRALAS HALTTLNKAA AAQAAKAANN SEKQALDSAC KELREAVLKN 360
  361 TSVPHELANS IIDYVCDALA ALYKSNNFDK DKWTSQLGVL YLSPLVGEEL ASQISSKIYD 420
  421 DLHAFYKSLN SVDGISNLTI EEEELVNTDF SLAYGGRLLL SHTNLHLYRG HRYGVVGHNG 480
  481 CGKSTLLRAI GDYKVENFPS PDEVKTCFVA HSLQGEDTSM AILDFVAQDK ALLTMNVTRQ 540
  541 EAADALHSVG FTAEMQENPV ASLSGGWKMK LELARAMLQK ADILLLDEPT NHLDVANIAW 600
  601 LEAYLTSQKN ITCLIVSHDS SFLDHVCTDI IHYEGVKNQA KKLGYYQGNL SAFVKVKPEA 660
  661 KSYYTLTATN EKFVFPPPGI LTGVRSNTRL ILKMTNASYT YPNAKKKSLD NVTVGLSLSS 720
  721 RVAILGPNGA GKSTLIKVLI GEVIPQEGKV FKHPNLRVGY VAQHAFHHLD QHLEKTPSQY 780
  781 IQWRYAGGQD REVSEKESRK LTEEDRAQLQ RDITVNGERR RVEALIGRQK LKKSFQYEIK 840
  841 WFGKPHKYNT WVSREILLEN GFQKFVQAFD DMESSREGLG FRELIPEDIR AHFEDVGLPG 900
  901 DIADYSPISS LSGGQKVKVV IAACLWNNPQ LLVLDEPTNF LDRDALGGLA VAIRDWEGGV 960
  961 VMISHNEEFV SALCPEHWHV EAGKVTGKGK TAVDDGKFED LSEKDLKKIE AKATKKKKLT1020
 1021 RNEIKAKERR ARERELAWLQ SPKGTEKPKS FFSDDEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.30103
Match:	2ix8A
Description:	No description for 2ix8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits