YRC Public Data Repository - Protein Structure Prediction

Protein:	cdc6
Organism:	Schizosaccharomyces pombe
Length:	1086 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc6.

Description	E-value	Query Range	Subject Range
gi\|11261487, gi\|... - gi\|173384\|gb\|AAA35303.1\| DNA polymerase delta [Schizosaccharomyces pombe], pir\|\|T43266 DNA-directed ...	1140.0	[0..1]	[1086..1]
gi\|28923105, gi\|... - gi\|32412410\|ref\|XP_326685.1\| hypothetical protein [Neurospora crassa], gi\|28923105\|gb\|EAA32322.1\| DN... gi\|85103616 - gi\|85103616\|ref\|XP_961558.1\| DNA polymerase delta catalytic subunit [Neurospora crassa OR74A]	1029.0	[0..1]	[1082..1]
gi\|46125595, gi\|... - gi\|46125595\|ref\|XP_387351.1\| hypothetical protein FG07175.1 [Gibberella zeae PH-1], gi\|42553791\|gb\|E...	1022.0	[0..1]	[1082..1]
gi\|159130051 - gi\|159130051\|gb\|EDP55165.1\| DNA polymerase delta large chain [Aspergillus fumigatus A1163] gi\|66853635, gi\|... - gi\|71002632\|ref\|XP_755997.1\| DNA polymerase delta catalytic subunit Cdc2 [Aspergillus fumigatus Af29...	1016.0	[0..6]	[1082..7]
gi\|39945902, gi\|... - gi\|39945902\|ref\|XP_362488.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA57102....	1016.0	[0..1]	[1082..1]
gi\|46097098, gi\|... - gi\|71005878\|ref\|XP_757605.1\| hypothetical protein UM01458.1 [Ustilago maydis 521], ref\|XP_399073.1\| ...	1015.0	[0..39]	[1086..11]
gi\|169775879 - gi\|169775879\|ref\|XP_001822406.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771141 - gi\|83771141\|dbj\|BAE61273.1\| unnamed protein product [Aspergillus oryzae] gi\|238502533, gi... - gi\|238502533\|ref\|XP_002382500.1\| DNA polymerase delta catalytic subunit Cdc2, putative [Aspergillus ...	1014.0	[0..1]	[1082..1]
gi\|119175148, gi... - gi\|90298637\|gb\|EAS28268.1\| hypothetical protein CIMG_09472 [Coccidioides immitis RS], gi\|119175148\|r...	1011.0	[0..1]	[1082..1]
gi\|114195533, gi... - gi\|115387887\|ref\|XP_001211449.1\| DNA polymerase delta catalytic subunit [Aspergillus terreus NIH2624...	1011.0	[0..1]	[1082..1]

Back

Predicted Domain #1

Region A:
Residues: [1-976]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDRSSNEGV VLNKENYPFP RRNGSIHGEI TDVKRRRLSE RNGYGDKKGS SSKEKTSSFE  60
   61 DELAEYASQL DQDEIKSSKD QQWQRPALPA INPEKDDIYF QQIDSEEFTE GSVPSIRLFG 120
  121 VTDNGNSILV HVVGFLPYFY VKAPVGFRPE MLERFTQDLD ATCNGGVIDH CIIEMKENLY 180
  181 GFQGNEKSPF IKIFTTNPRI LSRARNVFER GEFNFEELFP VGVGVTTFES NTQYLLRFMI 240
  241 DCDVVGMNWI HLPASKYQFR YQNRVSNCQI EAWINYKDLI SLPAEGQWSK MAPLRIMSFD 300
  301 IECAGRKGVF PDPSIDPVIQ IASIVTQYGD STPFVRNVFC VDTCSQIVGT QVYEFQNQAE 360
  361 MLSSWSKFVR DVDPDVLIGY NICNFDIPYL LDRAKSLRIH NFPLLGRIHN FFSVAKETTF 420
  421 SSKAYGTRES KTTSIPGRLQ LDMLQVMQRD FKLRSYSLNA VCSQFLGEQK EDVHYSIITD 480
  481 LQNGTADSRR RLAIYCLKDA YLPQRLMDKL MCFVNYTEMA RVTGVPFNFL LARGQQIKVI 540
  541 SQLFRKALQH DLVVPNIRVN GTDEQYEGAT VIEPIKGYYD TPIATLDFSS LYPSIMQAHN 600
  601 LCYTTLLDSN TAELLKLKQD VDYSVTPNGD YFVKPHVRKG LLPIILADLL NARKKAKADL 660
  661 KKETDPFKKA VLDGRQLALK VSANSVYGFT GATNGRLPCL AISSSVTSYG RQMIEKTKDV 720
  721 VEKRYRIENG YSHDAVVIYG DTDSVMVKFG VKTLPEAMKL GEEAANYVSD QFPNPIKLEF 780
  781 EKVYFPYLLI SKKRYAGLFW TRTDTYDKMD SKGIETVRRD NCPLVSYVID TALRKMLIDQ 840
  841 DVEGAQLFTK KVISDLLQNK IDMSQLVITK ALSKTDYAAK MAHVELAERM RKRDAGSAPA 900
  901 IGDRVAYVII KGAQGDQFYM RSEDPIYVLE NNIPIDAKYY LENQLSKPLL RIFEPILGEK 960
  961 ASSLLHGDHT RTISMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2gv9A
Description:	No description for 2gv9A was found.

Predicted Domain #2

Region A:
Residues: [977-1086]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APSVGGIMKF AVKVETCLGC KAPIKKGKTA LCENCLNRSA ELYQRQVAQV NDLEVRFARL  60
   61 WTQCQRCQGS MHQDVICTSR DCPIFYMRIA EHKKLQQSVD LLKRFDEMSW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	2ysmA
Description:	No description for 2ysmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits