YRC Public Data Repository - Protein Structure Prediction

Protein:	cdc27
Organism:	Schizosaccharomyces pombe
Length:	372 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc27.

Description	E-value	Query Range	Subject Range
gi\|40742169, gi\|... - gi\|67900642\|ref\|XP_680577.1\| hypothetical protein AN7308.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	187.0	[0..216]	[372..279]
NRPA1_ARATH - DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana GN=NRPA1 PE=3 SV=1	166.0	[0..229]	[330..1359]
gi\|83771120 - gi\|83771120\|dbj\|BAE61252.1\| unnamed protein product [Aspergillus oryzae] gi\|169775837 - gi\|169775837\|ref\|XP_001822385.1\| hypothetical protein [Aspergillus oryzae RIB40]	100.0	[0..156]	[372..215]
gi\|46116830, gi\|... - gi\|46116830\|ref\|XP_384433.1\| hypothetical protein FG04257.1 [Gibberella zeae PH-1], gi\|42550740\|gb\|E...	87.0	[0..229]	[372..294]
gi\|115385607, gi... - gi\|115385607\|ref\|XP_001209350.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114187797\|gb\|EA...	87.0	[0..157]	[314..228]
gi\|119175093, gi... - gi\|90298618\|gb\|EAS28249.1\| hypothetical protein CIMG_09453 [Coccidioides immitis RS], gi\|119175093\|r...	86.0	[0..229]	[372..266]
gi\|66853646, gi\|... - gi\|71002654\|ref\|XP_756008.1\| hypothetical protein Afu2g16710 [Aspergillus fumigatus Af293], gi\|66853...	76.0	[0..157]	[372..172]
gi\|32416452, gi\|... - gi\|39979157\|emb\|CAE85531.1\| hypothetical protein [Neurospora crassa], gi\|32416452\|ref\|XP_328704.1\| p... gi\|85108939 - gi\|85108939\|ref\|XP_962668.1\| hypothetical protein NCU07998 [Neurospora crassa OR74A]	66.0	[0..219]	[372..289]
gi\|58264442, gi\|... - gi\|58264442\|ref\|XP_569377.1\| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21], g... gi\|134088244, gi... - gi\|50258991\|gb\|EAL21672.1\| hypothetical protein CNBC7080 [Cryptococcus neoformans var. neoformans B-...	63.0	[0..84]	[372..178]
gi\|116195940, gi... - gi\|88180481\|gb\|EAQ87949.1\| hypothetical protein CHGG_04568 [Chaetomium globosum CBS 148.51], gi\|1161...	62.0	[0..309]	[372..357]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEWRNFLDI KVINESSLVT VDNLSLQLDI SSEKAQEYLN MFYQGNDFLY PIYLIHGQPI  60
   61 DDEINLEIDE ESQPISNFPV LQYILCDKSS LQEKQSRLKS GYKTVIFALS SAPLSDFDEL 120
  121 LPAVYEIREK DVLYKKEDAD KYGFIFNENS VPRVLKKAPS THSPQLSVPS KTSTIDKTDT 180
  181 RSTEKTKGKD IFSNARNQKG NSSRKNKKAP LEN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [214-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKEKEPLLPK EEKLSEQAKR ERDDLKNIMQ LEDESVSTTS VHDSEDDNLD SNNFQLEIGT  60
   61 EAKSAAPDEP QEIIKSVSGG KRRGKRKVKK YATTKDEEGF LVTKEEEVWE SFSEDENIST 120
  121 GTSNVVRNKP TTVNIATKKK NTAQSKPQQK SIMSFFGKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits