| Protein: | mid1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 920 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mid1.
| Description | E-value | Query Range |
Subject Range |
|
|
521.0 | [0..27] | [848..653] |
|
|
517.0 | [0..27] | [848..653] |
|
|
424.0 | [0..171] | [847..4] |
|
|
403.0 | [0..107] | [847..418] |
|
|
393.0 | [0..104] | [848..442] |
|
|
392.0 | [0..107] | [847..619] |
|
|
327.0 | [0..26] | [628..4014] |
|
|
325.0 | [0..336] | [847..665] |
|
|
298.0 | [0..88] | [848..411] |
|
Region A: Residues: [1-118] |
1 11 21 31 41 51
| | | | | |
1 MKEQEFSYRE AKDVSLDSKG LENSFLSSPN REKTPLFFEG NSNETSGYDQ TKNFTHGDGD 60
61 MSLGNLSELN VATDLLESLD LRSMYMHGYG HLDSSFSSQH SPDNRKRMSS TSVFKRIN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [119-315] |
1 11 21 31 41 51
| | | | | |
1 SEEEGRIPSL TYSAGTMNST SSSTASLKGA DIVADYETFN PDQNLAELSF DRSKSSRKRA 60
61 VEVAEFSRAK TMSPLEYTVQ HPYQSHNELS TNPARARAGS VPNLARIPSD VKPVPPAHLS 120
121 ASSTVGPRIL PSLPKDTTED NPALERVETT ASLDMDYKPL EPLAPIQEAP VEDTSEPFSS 180
181 VPEATLDDSD ISTESLR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [316-582] |
1 11 21 31 41 51
| | | | | |
1 KKVLAKMEAK RISSGSSYAS TLRKVYDFSE LSLPTNGKDY DELYLQSSRN SEPEISTIIN 60
61 DSLQQENMDE DISATSIPKS QAAYGHGSVT YHEVPRYNLT SASVGYSISS QRGRIKSSST 120
121 IDNLSAILSS EDLRHPSMQP VPGTKRTYSN YCENEPNKSS QSLVSSESHN VEGWNYSETG 180
181 TVGFYDPSAE ISASIDELRQ STPVARDSEL LSRAHSFDLN RLDLPSQDKS TSYEVPNGTE 240
241 NQSPRPVTSL GFVNETFFEE KPKAPLP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [583-703] |
1 11 21 31 41 51
| | | | | |
1 LGRFYIHLNS ILNISISEVH SPIKIIVNTP TQNMQLPWQA VNGNNRLDHD FAFHVDDNFK 60
61 VSFMFLDIPI EDKSNGSKGV SATKDVSNGK PAETKSKARK FFDKLFNRRK KRKLNKAAAV 120
121 E
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [704-920] |
1 11 21 31 41 51
| | | | | |
1 NSKAKKSVVI KKVSGTATLN LGNVKDSCFG KAFNVEIPII SRGFLEAIPV KINSIGKRTL 60
61 GNLTLTCLYI PELSVPEQEL PFTLEQATMD LRHVRSNYLY NEGYLYRLED SSIRRRFVVL 120
121 RSKQLNFYAE KGGQYLDTFQ LSKTVVSIPM VNFSEAVSNL GLVAGILATS VDRRHVQLFA 180
181 DSKKVCQKWL QVMNSRSFAL DRGTEKLWLQ EYVNFMA
|
| Detection Method: | |
| Confidence: | 1.28 |
| Match: | 1w1dA |
| Description: | Crystal Structure of the PDK1 Pleckstrin Homology (PH) domain bound to Inositol (1,3,4,5)-tetrakisphosphate |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.01457814746126 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.24286420828007 | bayes_pls_golite062009 |
| actin binding | 2.16868037795548 | bayes_pls_golite062009 |
| protein binding | 2.16501942211182 | bayes_pls_golite062009 |
| transporter activity | 1.32787835803882 | bayes_pls_golite062009 |
| actin filament binding | 0.958313601060859 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.622066425402481 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.598891515214317 | bayes_pls_golite062009 |
