YRC Public Data Repository - Protein Structure Prediction

Protein:	dma1
Organism:	Schizosaccharomyces pombe
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dma1.

Description	E-value	Query Range	Subject Range
gi\|28924514, gi\|... - gi\|32411287\|ref\|XP_326124.1\| hypothetical protein [Neurospora crassa], gi\|28924514\|gb\|EAA33637.1\| pr... gi\|85109348 - gi\|85109348\|ref\|XP_962873.1\| hypothetical protein NCU06269 [Neurospora crassa OR74A]	116.0	[0..1]	[265..359]
gi\|38106230, gi\|... - gi\|39939966\|ref\|XP_359520.1\| hypothetical protein MG05257.4 [Magnaporthe grisea 70-15], gb\|EAA52565....	111.0	[0..1]	[266..288]
gi\|44981743 - gi\|44981743\|gb\|AAS51493.1\| ACR267Cp [Ashbya gossypii ATCC 10895] gi\|44981743, gi\|... - gi\|45185953\|ref\|NP_983669.1\| ACR267Cp [Ashbya gossypii ATCC 10895], gi\|44981743\|gb\|AAS51493.1\| ACR26...	110.0	[0..23]	[266..193]
gi\|134090197, gi... - gi\|50256925\|gb\|EAL19643.1\| hypothetical protein CNBG2710 [Cryptococcus neoformans var. neoformans B-...	96.0	[0..18]	[262..250]
gi\|57228148, gi\|... - gi\|58269512\|ref\|XP_571912.1\| cytoplasm protein [Cryptococcus neoformans var. neoformans JEC21], gi\|5...	96.0	[0..18]	[262..250]
gi\|49652347, gi\|... - gi\|50407052\|ref\|XP_456683.1\| hypothetical protein DEHA0A08294g [Debaryomyces hansenii CBS767], gi\|49...	94.0	[0..4]	[250..244]
gi\|111061451 - gi\|111061451\|gb\|EAT82571.1\| hypothetical protein SNOG_10236 [Phaeosphaeria nodorum SN15]	94.0	[0..2]	[250..135]
gi\|49528259 - gi\|49528259\|emb\|CAG61916.1\| unnamed protein product [Candida glabrata] gi\|50293027, gi\|... - gi\|50293027\|ref\|XP_448946.1\| unnamed protein product [Candida glabrata], gi\|49528259\|emb\|CAG61916.1\|...	93.0	[0..23]	[261..340]
gi\|49651457 - gi\|49651457\|emb\|CAG78396.1\| YALI0F18634p [Yarrowia lipolytica] gi\|50556358, gi\|... - gi\|50556358\|ref\|XP_505587.1\| YALI0F18634p [Yarrowia lipolytica], gi\|49651457\|emb\|CAG78396.1\| unnamed...	92.0	[0..27]	[248..386]
gi\|88183687, gi\|... - gi\|88183687\|gb\|EAQ91155.1\| hypothetical protein CHGG_03090 [Chaetomium globosum CBS 148.51], gi\|1162...	91.0	[0..1]	[266..201]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSVEGYLK EQELAAETDS EKDDDKISIR LTNFVGPNAH SFSFDPLVRY WNRKQNNLPI  60
   61 YIGRYTERYN GGDVSAIVFR SKVVSRRHAQ IFYENNTWYI QD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	2fezA
Description:	Mycobacterium tuberculosis EmbR
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [103-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSSGTFLN HVRLSPPSKT SKPYPISNND ILQLGADYRG GHEVNYRCVR ARVELNNSWK  60
   61 IKLSPYNLNE FKRMQELVLC GSSESGPPEC CICLMPVLPC QALFVAPCSH SYHYKCIRPT 120
  121 LNESHPYFSC FICRKYHDLE APVEEGDESL NDLLRNATVK DDASE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.30103
Match:	1fbvA
Description:	Cbl; N-terminal domain of cbl (N-cbl); CBL
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.69791297400248	bayes_pls_golite062009
ubiquitin-protein ligase activity	2.20438586677555	bayes_pls_golite062009
protein binding	2.14586566310919	bayes_pls_golite062009
small conjugating protein ligase activity	1.97264874084155	bayes_pls_golite062009
molecular adaptor activity	1.33740973673697	bayes_pls_golite062009
acid-amino acid ligase activity	1.26357595913158	bayes_pls_golite062009
SH3/SH2 adaptor activity	1.2323381312171	bayes_pls_golite062009
signal transducer activity	0.999269271132931	bayes_pls_golite062009
molecular transducer activity	0.999269271132931	bayes_pls_golite062009
protein binding, bridging	0.83823250804321	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.748479359639348	bayes_pls_golite062009
kinase activity	0.662911740280035	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.493362981045534	bayes_pls_golite062009
enzyme regulator activity	0.456661966897198	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.452350351194157	bayes_pls_golite062009
protein phosphorylated amino acid binding	0.43808715710519	bayes_pls_golite062009
kinase regulator activity	0.262406945568467	bayes_pls_golite062009
transferase activity	0.169970258787201	bayes_pls_golite062009
phosphoprotein binding	0.16798254471727	bayes_pls_golite062009
protein kinase activity	0.0865488336042732	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: