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View Structure Prediction Details

Protein: sum3
Organism: Schizosaccharomyces pombe
Length: 636 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sum3.

Description E-value Query
Range		 Subject
Range
gi|2992158 - gi|2992158|dbj|BAA25324.1| Moc2 RNA helicase [Schizosaccharomyces pombe]
 464.0 [0..1] [636..1]
gi|74006728 - gi|74006728|ref|XP_850382.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like ...
 419.0 [0..1] [596..1]
DDX3X - DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked
gi|168277370 - gi|168277370|dbj|BAG10663.1| ATP-dependent RNA helicase DDX3X [synthetic construct]
ENSCJAT00000017723 - null
tr|M3WY95|M3WY95... - Uncharacterized protein OS=Felis catus GN=DDX3X PE=3 SV=1
 415.0 [0..1] [596..1]
DDX3X_MOUSE - ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3
 415.0 [0..1] [596..1]
tr|G3GSH5|G3GSH5... - ATP-dependent RNA helicase DDX3X OS=Cricetulus griseus GN=I79_000589 PE=3 SV=1
gi|20373098 - gi|20373098|dbj|BAB91216.1| RNA helicase [Mesocricetus auratus]
 415.0 [0..1] [596..1]
gi|109510438, gi... - gi|109511507|ref|XP_001060162.1| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box pr...
 414.0 [0..1] [596..1]
gi|109130455 - gi|109130455|ref|XP_001095294.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Macaca m...
 414.0 [0..1] [596..251]

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Predicted Domain #1
Region A:
Residues: [1-166] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNVQQQVD SVGSVTEKLQ KTNISRPRKY IPPFARDKPS AGAAPAVGDD ESVSSRGSSR  60
   61 SQTPSEFSSN YGGRREYNRG GHYGGGEGRQ NNYRGGREGG YSNGGGYRNN RGFGQWRDGQ 120
  121 HVIGARNTLL ERQLFGAVAD GTKVSTGINF EKYDDIPVEV SGGDIE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [167-636] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVNEFTSPPL NSHLLQNIKL SGYTQPTPVQ KNSIPIVTSG RDLMACAQTG SGKTAGFLFP  60
   61 ILSLAFDKGP AAVPVDQDAG MGYRPRKAYP TTLILAPTRE LVCQIHEESR KFCYRSWVRP 120
  121 CAVYGGADIR AQIRQIDQGC DLLSATPGRL VDLIDRGRIS LANIKFLVLD EADRMLDMGF 180
  181 EPQIRHIVEG ADMTSVEERQ TLMFSATFPR DIQLLARDFL KDYVFLSVGR VGSTSENITQ 240
  241 KVVHVEDSEK RSYLLDILHT LPPEGLTLIF VETKRMADTL TDYLLNSNFP ATSIHGDRTQ 300
  301 RERERALELF RSGRTSIMVA TAVASRGLDI PNVTHVINYD LPTDIDDYVH RIGRTGRAGN 360
  361 TGQAVAFFNR NNKGIAKELI ELLQEANQEC PSFLIAMARE SSFGGNGRGG RYSGRGGRGG 420
  421 NAYGARDFRR PTNSSSGYSS GPSYSGYGGF ESRTPHHGNT YNSGSAQSWW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.045757
Match: 2i4iA
Description: No description for 2i4iA was found.
YRC Informatics Platform - Version 3.0
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