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View Structure Prediction Details

Protein: spe2
Organism: Schizosaccharomyces pombe
Length: 378 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spe2.

Description E-value Query
Range		 Subject
Range
gi|125572736, gi... - gi|70663892|emb|CAD41510.3| OSJNBa0029H02.4 [Oryza sativa (japonica cultivar-group)], gi|125572736|g...
 476.0 [0..2] [377..51]
DCAM_ORYSI - S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2
gi|3929545 - gi|3929545|gb|AAC79990.1| S-adenosylmethionine decarboxylase [Oryza sativa]
 471.0 [0..4] [377..1]
DCAM_NICSY - S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1
 470.0 [0..10] [377..2]
gi|7436597, gi|2... - pir||T01934 adenosylmethionine decarboxylase (EC 4.1.1.50) - common tobacco, gi|2687584|gb|AAB88854....
 469.0 [0..10] [377..2]
DCAM_DATST - S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1
 468.0 [0..10] [377..2]
gi|19526455 - gi|19526455|gb|AAL89723.1|AF488307_1 S-adenosylmethionine decarboxylase [Glycine max]
 465.0 [0..11] [377..1]
gi|62199789 - gi|62199789|gb|AAX76987.1| S-adenosylmethionine decarboxylase [Oryza sativa (indica cultivar-group)]
 464.0 [0..4] [377..1]

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Predicted Domain #1
Region A:
Residues: [1-378] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTLVVDQE NSEEFNTSSF EGPEKLLELW FSAPIKTNLS AGEKANLGLK AVSRNDWDDM  60
   61 LAQAQCKVLS VVNSEEIDAY LLSESSMFVF AHKIILKTCG TTTLLASLPR LLEIASSVGF 120
  121 DRPLRIFYSR KNFLYPERQL APHTSWEEEV RYLQLFFPSG CSYVVGPTNK NHWHLFSDLA 180
  181 DDYSLLEDSL DPEDETLEVL MTDMSPERSL QFYAPSLDVV RSARGDDYVR EKNNLSGGHI 240
  241 LGSYVADESG VRDLCSTSDK KAVLDAFQFE PIGFSSNMIY KDRYATIHVT PQEHCSYASF 300
  301 ETNVSQFQFG RSISETIEKT VKTFGANKFC LTLFQAKGAS QEKHFSAKLK SFSSYKREEF 360
  361 IVYDFPGYDL IFASFTAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 127.0
Match: 1msvA
Description: S-adenosylmethionine decarboxylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
adenosylmethionine decarboxylase activity 6.97190143843809 bayes_pls_golite062009
carbon-carbon lyase activity 2.68228786608236 bayes_pls_golite062009
carboxy-lyase activity 1.55250570844159 bayes_pls_golite062009
binding 1.4725833406744 bayes_pls_golite062009
catalytic activity 1.25843830926101 bayes_pls_golite062009
lyase activity 0.834955527171148 bayes_pls_golite062009
protein binding 0.443666756110255 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle