YRC Public Data Repository - Protein Structure Prediction

Protein:	cwf12
Organism:	Schizosaccharomyces pombe
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cwf12.

Description	E-value	Query Range	Subject Range
gi\|114589192 - gi\|114589192\|ref\|XP_516736.2\| PREDICTED: similar to KIAA1160 protein [Pan troglodytes]	283.0	[0..6]	[215..119]
gi\|109098078 - gi\|109098078\|ref\|XP_001094091.1\| PREDICTED: similar to CG9667-PA [Macaca mulatta]	274.0	[0..6]	[215..96]
gi\|6330157 - gi\|6330157\|dbj\|BAA86474.1\| KIAA1160 protein [Homo sapiens]	270.0	[0..6]	[215..39]
gi\|46105120, gi\|... - gi\|46105120\|ref\|XP_380364.1\| hypothetical protein FG00188.1 [Gibberella zeae PH-1], gi\|42546067\|gb\|E...	269.0	[0..15]	[216..32]
gi\|73984510 - gi\|73984510\|ref\|XP_849089.1\| PREDICTED: similar to CG9667-PA isoform 6 [Canis familiaris]	264.0	[0..6]	[215..19]
gi\|90301662, gi\|... - gi\|90301662\|gb\|EAS31293.1\| hypothetical protein CIMG_06772 [Coccidioides immitis RS], gi\|119183763\|r...	261.0	[0..15]	[216..32]
ISY1_MAGO7 - Pre-mRNA-splicing factor ISY1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=IS... ISY1_MAGGR - Pre-mRNA-splicing factor ISY1 OS=Magnaporthe grisea GN=ISY1 PE=3 SV=1	260.0	[0..15]	[216..32]
ISY1_NEUCR - Pre-mRNA-splicing factor isy1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DS... ISY1_NEUCR - Pre-mRNA-splicing factor isy-1 OS=Neurospora crassa GN=isy-1 PE=3 SV=1	260.0	[0..15]	[205..32]
CG9667-PA - This gene is referred to in FlyBase by the symbol Dmel\CG9667 (CG9667, FBgn0037550). It is a protein...	251.0	[0..3]	[215..17]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAKYVVGS KPTEKRPKDI KSIKSVPICE KHRASVVKDI SRKISRIQSA TLPEYQIRDL  60
   61 NDAINRLMRE KHEWEVQIRD LGGINYLYNK AKLFEDEGEQ ISDIDDYRYY GRARELPGVK 120
  121 ELFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.045757
Match:	1x4tA
Description:	Solution structure of Isy1 domain in hypothetical protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	8.16477902643941	bayes_pls_golite062009
catalytic activity	0.368034275052766	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [125-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADMSFIPERQ RKQEMQKRRL DAWYFGYIPP AQESLLEDFE AKIEEQQHKH LENLGDEVEQ  60
   61 DWKPLVIEQI PTRDDVEAIL LERRKNALLS RIS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: