| Protein: | cap1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 551 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cap1.
| Description | E-value | Query Range |
Subject Range |
|
|
686.0 | [0..68] | [549..8] |
|
|
685.0 | [0..68] | [549..8] |
|
|
685.0 | [0..68] | [549..8] |
|
|
685.0 | [0..68] | [549..8] |
|
|
683.0 | [0..68] | [549..8] |
|
|
682.0 | [0..65] | [549..5] |
|
|
680.0 | [0..69] | [549..9] |
|
Region A: Residues: [1-85] |
1 11 21 31 41 51
| | | | | |
1 MSDMINIRET GYNFTTILKR LEAATSRLED LVESGHKPLP NMHRPSRDSN SQTHNISFNI 60
61 GTPTAPTVST GSPAVASLHD QVAAA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [86-328] |
1 11 21 31 41 51
| | | | | |
1 ISPRNRSLTS TSAVEAVPAS ISAYDEFCSK YLSKYMELSK KIGGLIAEQS EHVEKAFNLL 60
61 RQVLSVALKA QKPDMDSPEL LEFLKPIQSE LLTITNIRDE HRTAPEFNQL STVMSGISIL 120
121 GWVTVEPTPL SFMSEMKDSS QFYANRVMKE FKGKDDLQIE WVRSYLTLLT ELITYVKTHF 180
181 KTGLTWSTKQ DAVPLKTALA NLSASKTQAP SSGDSANGGL PPPPPPPPPS NDFWKDSNEP 240
241 APA
|
| Detection Method: | |
| Confidence: | 67.69897 |
| Match: | 1tjfA |
| Description: | The crystal structure of the N-terminal domain of CAP indicates variable oligomerisation |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 5.81884714997094 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 4.39652693178112 | bayes_pls_golite062009 |
| adenylate cyclase binding | 2.08284870927262 | bayes_pls_golite062009 |
| binding | 1.8340549733034 | bayes_pls_golite062009 |
| enzyme binding | 1.53072876683435 | bayes_pls_golite062009 |
| protein binding | 0.871734119777931 | bayes_pls_golite062009 |
|
Region A: Residues: [329-394] |
1 11 21 31 41 51
| | | | | |
1 DNKGDMGAVF AEINKGEGIT SGLRKVDKSE MTHKNPNLRK TGPTPGPKPK IKSSAPSKPA 60
61 ETAPVK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [395-551] |
1 11 21 31 41 51
| | | | | |
1 PPRIELENTK WFVENQVDNH SIVLDSVELN HSVQIFGCSN CTIIIKGKLN TVSMSNCKRT 60
61 SVVVDTLVAA FDIAKCSNFG CQVMNHVPMI VIDQCDGGSI YLSKSSLSSE VVTSKSTSLN 120
121 INVPNEEGDY AERAVPEQIK HKVNEKGELV SEIVRHE
|
| Detection Method: | |
| Confidence: | 76.221849 |
| Match: | 1k8fA |
| Description: | C-terminal domain of adenylylcyclase associated protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 4.94933252861141 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 4.21664682046338 | bayes_pls_golite062009 |
| actin monomer binding | 2.04365563273836 | bayes_pls_golite062009 |
| binding | 1.57578562719958 | bayes_pls_golite062009 |
| adenylate cyclase binding | 1.13353932343086 | bayes_pls_golite062009 |
| enzyme binding | 0.705135358375 | bayes_pls_golite062009 |
| protein binding | 0.651719649953198 | bayes_pls_golite062009 |
