YRC Public Data Repository - Protein Structure Prediction

Protein:	atp17
Organism:	Schizosaccharomyces pombe
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp17.

Description	E-value	Query Range	Subject Range
gi\|85105069 - gi\|85105069\|ref\|XP_961880.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32408191, gi\|... - gi\|32408191\|ref\|XP_324577.1\| predicted protein [Neurospora crassa], gi\|28923463\|gb\|EAA32644.1\| predi...	157.0	[0..1]	[91..4]
gi\|44981679 - gi\|44981679\|gb\|AAS51429.1\| ACR203Wp [Ashbya gossypii ATCC 10895] gi\|45185889, gi\|... - gi\|45185889\|ref\|NP_983605.1\| ACR203Wp [Ashbya gossypii ATCC 10895], gi\|44981679\|gb\|AAS51429.1\| ACR20...	154.0	[0..1]	[94..44]
gi\|88179705, gi\|... - gi\|88179705\|gb\|EAQ87173.1\| hypothetical protein CHGG_03792 [Chaetomium globosum CBS 148.51], gi\|1161...	149.0	[0..1]	[90..4]
gi\|38103708, gi\|... - gi\|39944248\|ref\|XP_361661.1\| hypothetical protein MG04135.4 [Magnaporthe grisea 70-15], gb\|EAA50376....	143.0	[0..1]	[90..4]
gi\|70989661, gi\|... - gi\|70989661\|ref\|XP_749680.1\| mitochondrial F1F0 ATP synthase subunit F (Atp17) [Aspergillus fumigatu... gi\|159129087 - gi\|159129087\|gb\|EDP54201.1\| mitochondrial F1F0 ATP synthase subunit F (Atp17), putative [Aspergillus...	143.0	[0..1]	[96..4]
ATP17 - Subunit f of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily cons... gi\|190404687 - gi\|190404687\|gb\|EDV07954.1\| ATP synthase subunit f [Saccharomyces cerevisiae RM11-1a] gi\|151942350 - gi\|151942350\|gb\|EDN60706.1\| F1F0 ATP synthase subunit f [Saccharomyces cerevisiae YJM789] ATPK_YEAST - ATP synthase subunit f, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AT...	142.0	[0..1]	[94..2]
gi\|115400655, gi... - gi\|115400655\|ref\|XP_001215916.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	141.0	[0..1]	[96..4]
gi\|49524200 - gi\|49524200\|emb\|CAG57791.1\| unnamed protein product [Candida glabrata] gi\|49524200, gi\|... - gi\|50284941\|ref\|XP_444898.1\| hypothetical protein CAGL0A03036g [Candida glabrata CBS138], gi\|4952420...	122.0	[0..1]	[96..2]
gi\|111063013 - gi\|111063013\|gb\|EAT84133.1\| hypothetical protein SNOG_08965 [Phaeosphaeria nodorum SN15]	119.0	[0..16]	[94..123]
gi\|90305768, gi\|... - gi\|90305768\|gb\|EAS35399.1\| ATP synthase f chain, mitochondrial precursor [Coccidioides immitis RS], ...	118.0	[0..1]	[90..4]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPFPLKSFI PPQVANPTAL NAFPSSARMG RIVDFYSRLP HGPAPKKSSN SFFSWYYKKY  60
   61 LGKNASGAPL LHLVGAVLVF SYASEYYYHI RHHEEH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.571	a.243.1	Description not found.
View	Download	0.555	a.243.1	Description not found.
View	Download	0.542	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.525	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.460	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.460	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.417	a.4.1	Homeodomain-like
View	Download	0.352	a.46.1	Methionine synthase domain
View	Download	0.307	a.4.3	ARID-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits