YRC Public Data Repository - Protein Structure Prediction

Protein:	pap1
Organism:	Schizosaccharomyces pombe
Length:	552 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pap1.

Description	E-value	Query Range	Subject Range
gi\|101092, gi\|5001 - gi\|5001\|emb\|CAA40363.1\| AP-1-like transcription factor [Schizosaccharomyces pombe], pir\|\|S15664 tran...	384.0	[0..1]	[542..1]
gi\|4100263 - gi\|4100263\|gb\|AAD00802.1\| Cap1 [Candida albicans] gi\|46443503, gi\|... - gi\|68468526\|ref\|XP_721582.1\| hypothetical protein CaO19.9191 [Candida albicans SC5314], gi\|46443503\|...	242.0	[0..45]	[550..9]
AP1_KLULA - AP-1-like transcription factor OS=Kluyveromyces lactis GN=YAP1 PE=3 SV=1 AP1_KLULA - AP-1-like transcription factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NB...	222.0	[0..26]	[548..1]
gi\|85085674 - gi\|85085674\|ref\|XP_957544.1\| related to AP-1-like transcription factor [MIPS] [Neurospora crassa OR7... gi\|32405222, gi\|... - gi\|32405222\|ref\|XP_323224.1\| related to AP-1-like transcription factor [MIPS] [Neurospora crassa], g...	221.0	[0..22]	[551..84]
gi\|16945426 - gi\|16945426\|emb\|CAB91681.2\| related to AP-1-like transcription factor [Neurospora crassa] gi\|157071403, gi... - gi\|164426604\|ref\|XP_957544.2\| hypothetical protein NCU03905 [Neurospora crassa OR74A], gi\|157071403\|...	216.0	[0..22]	[551..84]
gi\|67901052, gi\|... - gi\|67901052\|ref\|XP_680782.1\| hypothetical protein AN7513.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	203.0	[0..43]	[550..121]
gi\|42549157, gi\|... - gi\|46129230\|ref\|XP_388976.1\| hypothetical protein FG08800.1 [Gibberella zeae PH-1], gi\|42549157\|gb\|E...	170.0	[0..4]	[551..93]
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	169.0	[0..197]	[411..1672]
gi\|46228363 - gi\|46228363\|gb\|EAK89262.1\| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ... gi\|66359288 - gi\|66359288\|ref\|XP_626822.1\| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...	169.0	[0..197]	[424..1679]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQTETLSS TSNIPIAKAE PEQSADFSAS HKKRGPVSDR SSRRTSSEEV DLMPNVDDEV  60
   61 DGDVKPKKIG RKNSDQEPSS KRKAQNRAAQ RAFRKRKEDH LKALETQVVT LKELHSSTTL 120
  121 ENDQLRQKVR QLEEELRILK DGSFTFEMSL PHRNPSLSSL PT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.0
Match:	1gd2E
Description:	PAP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [163-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGFSSNFAHM KDGISPQSNL HLSPNSIEKP NMHQNVLHND RSADNLNHRY QVPPTLVDSN  60
   61 SAQGTLSPET PSSSDSPSNL YLNYPKRKSI THLHHDCSAL SNGENGEDVA DGKQFCQKLS 120
  121 TACGSIACSM LTKTTPHRAS VDILSNLHES TVSPPMADES VQRSSEVSKS IPNVELSLNV 180
  181 NQQFVSPFGG TDSF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [357-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLPTDTGLDS LFEPDSAIEN SHLKNVVMEP ELFQAWREPA ESLDKEFFND EGEIDDVFHN  60
   61 YFHNSNENGD LITNSLHGLD FLENANESFP EQMYPFIKHN KDYISNHPDE VPPDGLPQK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [476-552]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKHDTSSQMP SENEIVPAKE RAYLSCPKVW SKIINHPRFE SFDIDDLCSK LKNKAKCSSS  60
   61 GVLLDERDVE AALNQFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1sseB
Description:	Solution structure of the oxidized form of the Yap1 redox domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits