YRC Public Data Repository - Protein Structure Prediction

Protein:	meu17
Organism:	Schizosaccharomyces pombe
Length:	450 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for meu17.

Description	E-value	Query Range	Subject Range
gi\|83648, gi\|166506 - gi\|83648\|pir\|\|A29776 glucan 1,4-alpha-glucosidase (EC 3.2.1.3) G2 precursor - Aspergillus awamori, g... gi\|2344 - gi\|2344\|emb\|CAA25304.1\| preproglucoamylase G2 [Aspergillus niger]	425.0	[0..3]	[449..2]
gi\|49237635 - gi\|49237635\|gb\|AAT58037.1\| glucoamylase [Aspergillus ficuum]	424.0	[0..3]	[449..2]
gi\|49615615 - gi\|49615615\|gb\|AAT67041.1\| glucoamylase [Aspergillus niger]	421.0	[0..3]	[449..2]
gi\|46398247 - gi\|46398247\|gb\|AAS91802.1\| histidine-tagged glucoamylase [synthetic construct]	420.0	[0..3]	[448..2]
gi\|145017941, gi... - gi\|39973515\|ref\|XP_368148.1\| hypothetical protein MGG_01096 [Magnaporthe grisea 70-15], gb\|EAA49438....	418.0	[0..1]	[448..23]
AMYG_ASPSH - Glucoamylase OS=Aspergillus shirousami GN=glaA PE=3 SV=1 gi\|83686 - gi\|83686\|pir\|\|JQ0607 glucan 1,4-alpha-glucosidase (EC 3.2.1.3) precursor - Aspergillus sp	418.0	[0..3]	[448..2]
AMYG_ASPOR - Glucoamylase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=glaA PE=2 SV=2 AMYG_ASPOR - Glucoamylase OS=Aspergillus oryzae GN=glaA PE=2 SV=2	417.0	[0..1]	[449..1]

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Predicted Domain #1

Region A:
Residues: [1-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTYWLFLLL GGVVSAESLL SPNKRSKEAS MDEWTDQQKG IAMGHMLNNI GDSGMHAKDI  60
   61 NPGCIIASPS TDSPDYYYQW VRDSALTIMT ILDRFFEGDK GLEPIIVKYM DEMVRLQKVP 120
  121 NPSGDFYAGG LGEPKFNVDG TSYDGDWGRP QNDSPALRAI AFIKYMNYLF ENGKEVHEVT 180
  181 VWIEAVLADL DYTANHWTEA SFDLWEEIKD VHYFTLAVQK RAMQDGTAFA KRIGAPDQAA 240
  241 LYQRTIEPID LKLGEFWDPG MGVIKGYKGR VDRSGLDCST LLASLYSNEF DMHILPTLLK 300
  301 LQETMTRDYP VNQGWKQAMG RYPEDVYDGV SKSIGNPWFI CTSSAAEIIY KAIAYYDNKG 360
  361 LPELTEYNIH FFMKFAEFGD PYNWSVIRKN MHTYADNFLK AVAEFQHPNG SMSEQFSRDD 420
  421 GHQKGARDLT WSYSSLLNAI YRREAIKGSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	114.0
Match:	1gaiA
Description:	GLUCOAMYLASE-471 COMPLEXED WITH D-GLUCO-DIHYDROACARBOSE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glucan 1,4-alpha-glucosidase activity	5.15001795572345	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	4.93931890201451	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	4.50236427574756	bayes_pls_golite062009
hydrolase activity	3.40551547894122	bayes_pls_golite062009
catalytic activity	1.16285856935495	bayes_pls_golite062009
trehalase activity	1.11894002588912	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.903455956749701	bayes_pls_golite062009
binding	0.668943347886111	bayes_pls_golite062009
protein binding	0.31260719357226	bayes_pls_golite062009
alpha,alpha-trehalase activity	0.17719034423607	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.0683547784833305	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: