YRC Public Data Repository - Protein Structure Prediction

Protein:	alp7
Organism:	Schizosaccharomyces pombe
Length:	474 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alp7.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	188.0	[0..10]	[473..1848]
gi\|29468 - gi\|29468\|emb\|CAA35940.1\| beta-myosin heavy chain (1151 AA) [Homo sapiens]	179.0	[0..7]	[473..57]
MYH2_PIG - Myosin-2 OS=Sus scrofa GN=MYH2 PE=2 SV=1 gi\|55741490 - ref\|NP_999301.1\| myosin heavy chain 2a [Sus scrofa]	178.0	[0..7]	[473..845]
gi\|114652395 - gi\|114652395\|ref\|XP_001150786.1\| PREDICTED: myosin, heavy polypeptide 7, cardiac muscle, beta [Pan t...	178.0	[0..7]	[473..708]

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Predicted Domain #1

Region A:
Residues: [1-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIVSSSTD YSRRSPSSSS IGTNETDHTG FHEKRQGASS ESLIPPAQRS SEESMPAPKL  60
   61 FPKLTSKPNP QLNLKDTLNK RVSDRLQALE LNKSFDFSGT PRPMHPISHP LSQHKTPEFK 120
  121 HRKRNVESIL TPKNPSLFSS SNAASQRGSL NTAPSNFAYS HSSSLQTSAS SRPPVLSNGS 180
  181 FPRQTNTAPL NPPVHLKDNI RNSATPSTSQ ADIPTQYPIN STQKQQAKYE AEIEGYKAKL 240
  241 AGTYHEISVL QNTIVNVSGQ LIAVNDQLQQ LRSGKASTSP STKDTNMRLV EGHNEETLAL 300
  301 QRGKYTQEEV DKLIQER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.154902
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [318-474]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVAEDLHA QYSAKHTQKI NAFKANYARK YEATIQELQN QIGTAPNAPK ISNSNWEEER  60
   61 RALKADNQTL QKQLEKAIQE RQDMSDFLNN FKADMAKSDK LLMQQQSQQT GDLETLRLQL 120
  121 QALQEELRVE REERQQLIQM SEDLVIAMDQ LNLEQKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits