YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC19G12.04
Organism:	Schizosaccharomyces pombe
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC19G12.04.

Description	E-value	Query Range	Subject Range
ALLA_PSEA7 - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain PA7) GN=allA PE=3 SV=1	221.0	[0..3]	[187..1]
gi\|107100945 - gi\|107100945\|ref\|ZP_01364863.1\| hypothetical protein PaerPA_01001975 [Pseudomonas aeruginosa PACS2]	219.0	[0..3]	[187..1]
ALLA_PSEAB - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=allA PE=3 SV=1 ALLA_PSEA8 - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain LESB58) GN=allA PE=3 SV=1 ALLA_PSEAE - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228... gi\|254239863, gi... - gi\|84328428\|ref\|ZP_00976435.1\| COG3194: Ureidoglycolate hydrolase [Pseudomonas aeruginosa 2192], gi\|... gi\|126166541, gi... - gi\|84321700\|ref\|ZP_00970054.1\| COG3194: Ureidoglycolate hydrolase [Pseudomonas aeruginosa C3719], gi... ALLA_PSEAE - Ureidoglycolate hydrolase OS=Pseudomonas aeruginosa GN=allA PE=3 SV=1	219.0	[0..3]	[187..1]
ALLA_PSEE4 - Ureidoglycolate lyase OS=Pseudomonas entomophila (strain L48) GN=allA PE=3 SV=1 gi\|95109828 - gi\|95109828\|emb\|CAK14533.1\| Ureidoglycolate hydrolase [Pseudomonas entomophila L48]	218.0	[0..3]	[187..1]
ALLA_PSEPG - Ureidoglycolate lyase OS=Pseudomonas putida (strain GB-1) GN=allA PE=3 SV=1 tr\|I7BYQ8\|I7BYQ8... - Ureidoglycolate hydrolase OS=Pseudomonas putida (strain DOT-T1E) GN=allA PE=3 SV=1 tr\|E4RC83\|E4RC83... - Ureidoglycolate hydrolase OS=Pseudomonas putida (strain BIRD-1) GN=allA PE=3 SV=1 ALLA_PSEP1 - Ureidoglycolate lyase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=allA PE=3 SV=1 ALLA_PSEPK - Ureidoglycolate lyase OS=Pseudomonas putida (strain KT2440) GN=allA PE=1 SV=1	218.0	[0..3]	[187..1]
ALLA_PSEPF - Ureidoglycolate lyase OS=Pseudomonas fluorescens (strain Pf0-1) GN=allA PE=3 SV=1	217.0	[0..3]	[187..1]
ALLA_PSEF5 - Ureidoglycolate lyase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=allA PE=3 SV=1	215.0	[0..3]	[187..1]
ALLA_PSE14 - Ureidoglycolate lyase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=allA PE=...	213.0	[0..3]	[187..1]
ALLA_PSEU2 - Ureidoglycolate lyase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=allA PE=3 SV=1	213.0	[0..3]	[187..1]
gi\|74019843, gi\|... - gi\|74019843\|ref\|ZP_00690455.1\| Ureidoglycolate hydrolase [Burkholderia ambifaria AMMD], gi\|72607488\|...	212.0	[0..3]	[175..1]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKKIYAQA LTDEAFAPFG SVVQQKDDVK MVSANGGTAK KYLKVSESIQ NYEKSSSAST  60
   61 RKGVWNFFST HPSVHPANDE HAAFQISVLE RHPFTTQTFI PMCRSSDEQA YLIAVAPNAP 120
  121 DGMPDWNQTQ AFVAKGAQGV TYSAGVWHAP MVTIGKETML AAFNYENGVA EDDCQVQSTE 180
  181 SPIEVFIKIS T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.045757
Match:	2bdrA
Description:	Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ureidoglycolate hydrolase activity	2.63080015873229	bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.64225826538892	bayes_pls_golite062009
dioxygenase activity	0.930778069601015	bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	0.901194069960417	bayes_pls_golite062009
binding	0.797072992275176	bayes_pls_golite062009
nucleic acid binding	0.623892372229422	bayes_pls_golite062009
DNA binding	0.483453407263708	bayes_pls_golite062009
transcription regulator activity	0.465649136635506	bayes_pls_golite062009
catalytic activity	0.401988496917198	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: