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View Structure Prediction Details

Protein: CG18809-PA, FBpp...
Organism: Drosophila melanogaster
Length: 362 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG18809-PA, FBpp....

Description E-value Query
Range
Subject
Range
CG5146-PA - This gene is referred to in FlyBase by the symbol Dmel\CG5146 (CG5146, FBgn0035617). It is a protein...
157.0 [0..2] [335..309]

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Predicted Domain #1
Region A:
Residues: [1-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAARLPYYQ RDQEDGHQRR AARGHQRGYY ERGSGSGSSR REHSRYSRSR SRSRSRSRSA  60
   61 ERFGQRRRHQ KRQSSRYHRD RDSRDRSRDR SRDRSRDRER DRDRDHSRRS SHYRRSESPS 120
  121 SSDIGHGSNN SQRRGHHASS SSKSELSAVQ KAAAAAAAAT NQVQLAGKSS AASAVGAYYN 180
  181 LDTDEPFDKE RIHREMEQKL REALAREGKV YPPPKPEPPS HPVFAND

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [228-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSFMELFKKM QEGQKQQATS QLMQPSVKEV LQQQLVPPEA ASTGPALPAI ALGAASSAAA  60
   61 PYIAAAAAGK LAPPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [303-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIVGRRRGGK VLKTGVVAKV KTPNESDVDP KDFWSLYLAE VNKYKSNACD TDNGKRPLVK  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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