YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CG18809-PA, FBpp...
Organism: Drosophila melanogaster
Length: 362 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG18809-PA, FBpp....

Description E-value Query
Range
Subject
Range
CG5146-PA - This gene is referred to in FlyBase by the symbol Dmel\CG5146 (CG5146, FBgn0035617). It is a protein...
157.0 [0..2] [335..309]

Back

Predicted Domain #1
Region A:
Residues: [1-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAARLPYYQ RDQEDGHQRR AARGHQRGYY ERGSGSGSSR REHSRYSRSR SRSRSRSRSA  60
   61 ERFGQRRRHQ KRQSSRYHRD RDSRDRSRDR SRDRSRDRER DRDRDHSRRS SHYRRSESPS 120
  121 SSDIGHGSNN SQRRGHHASS SSKSELSAVQ KAAAAAAAAT NQVQLAGKSS AASAVGAYYN 180
  181 LDTDEPFDKE RIHREMEQKL REALAREGKV YPPPKPEPPS HPVFAND

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [228-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSFMELFKKM QEGQKQQATS QLMQPSVKEV LQQQLVPPEA ASTGPALPAI ALGAASSAAA  60
   61 PYIAAAAAGK LAPPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [303-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIVGRRRGGK VLKTGVVAKV KTPNESDVDP KDFWSLYLAE VNKYKSNACD TDNGKRPLVK  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle