YRC Public Data Repository - Protein Structure Prediction

Protein:	CG6398-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG6398-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|195163888, gi... - gi\|195163888\|ref\|XP_002022781.1\| GL14750 [Drosophila persimilis], gi\|194104804\|gb\|EDW26847.1\| GL1475... gi\|54643500\|gb\|E... - GA19563-PA [Drosophila pseudoobscura], GA19563 [Drosophila pseudoobscura pseudoobscura] gi\|125982843, gi... - gi\|54643500\|gb\|EAL32244.1\| GA19563 [Drosophila pseudoobscura pseudoobscura], gi\|125982843\|ref\|XP_001...	307.0	[0..1]	[290..1]
gi\|30177556, gi\|... - gi\|31207255\|ref\|XP_312594.1\| AGAP002361-PA [Anopheles gambiae str. PEST], gi\|30177556\|gb\|EAA07877.2\|... AGAP002361-PA - \|protein_coding\|2R:20620164:20636209:-1\|gene:AGAP002361	306.0	[0..1]	[290..1]
gi\|108872847, gi... - gi\|157127665\|ref\|XP_001655028.1\| hypothetical protein AaeL_AAEL010898 [Aedes aegypti], gi\|108872847\|...	284.0	[0..1]	[290..1]
gi\|157768052 - gi\|157768052\|ref\|XP_001675847.1\| Hypothetical protein CBG02030 [Caenorhabditis briggsae AF16] gi\|187037767, gi... - gi\|39591040\|emb\|CAE58820.1\| Hypothetical protein CBG02030 [Caenorhabditis briggsae], gi\|187037767\|em...	256.0	[0..1]	[290..52]
CE30142 - status:Partially_confirmed UniProt:Q20713 protein_id:AAA81408.2	225.0	[0..1]	[267..17]
gi\|114588141 - gi\|114588141\|ref\|XP_516613.2\| PREDICTED: similar to claudin domain containing 1 protein isoform b [P...	225.0	[0..5]	[243..111]
gi\|55729894 - gi\|55729894\|emb\|CAH91674.1\| hypothetical protein [Pongo abelii] gi\|197097552 - gi\|197097552\|ref\|NP_001127451.1\| claudin domain containing 1 [Pongo abelii] gi\|93588620 - gi\|93588620\|ref\|NP_001035272.1\| claudin domain containing 1 protein isoform b [Homo sapiens]	223.0	[0..5]	[243..29]
gi\|56403857 - gi\|56403857\|emb\|CAI29714.1\| hypothetical protein [Pongo abelii] gi\|56403857\|emb\|... - hypothetical protein [Pongo pygmaeus]	223.0	[0..5]	[243..29]
gi\|66549567 - gi\|66549567\|ref\|XP_623543.1\| PREDICTED: similar to CG6398-PA [Apis mellifera]	223.0	[0..1]	[290..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCSAVTLSI ATICAIIATA LLAIAFSTDN WLHYDVWRNQ IQSFAAKHSD AESLLHNMNV  60
   61 KYYYYTRTRG LFRICYPKER PPVSAVPTYL SPIETHCS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [99-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIDYFPQAED EKIANEDATS RLHLARSCIA LFIISFVTIF CAFWTGLSGC WKRSSGAITA  60
   61 TSILLLVTCL LAAGAMGLWH TVEFFEKEKV VGEDYFQQWN TVLRDNTKIA YDWSYIVAWA 120
  121 GIGTCLLASI LLSGAAVCLR NEREKEEQLN LQYLMPVYSQ KQPPYPPYAN YAQPQIYPGP 180
  181 YYHGSQYGPY NY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits