YRC Public Data Repository - Protein Structure Prediction

Protein:	MSBP-PB, MSBP-PA...
Organism:	Drosophila melanogaster
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSBP-PB, MSBP-PA....

Description	E-value	Query Range	Subject Range
gi\|185134138, gi... - gi\|25046107\|gb\|AAL49963.1\| progestin membrane receptor component 1 [Oncorhynchus mykiss], gi\|1851341...	219.0	[0..23]	[202..5]
PGRC2_MOUSE - Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2	210.0	[0..40]	[203..49]
PGRC2_RAT - Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1	210.0	[0..40]	[203..49]
gi\|21555444, gi\|... - gi\|4960156\|gb\|AAD34616.1\|AF153284_1 putative progesterone-binding protein homolog [Arabidopsis thali...	208.0	[0..39]	[225..20]
gi\|109075624 - gi\|109075624\|ref\|XP_001082791.1\| PREDICTED: similar to progesterone membrane binding protein [Macaca...	208.0	[0..40]	[203..79]
gi\|61859954 - gi\|61859954\|ref\|XP_613630.1\| PREDICTED: similar to progesterone membrane binding protein [Bos taurus...	207.0	[0..40]	[203..79]
gi\|57100531 - gi\|57100531\|ref\|XP_533292.1\| PREDICTED: similar to progesterone membrane binding protein [Canis fami...	206.0	[0..40]	[203..55]
gi\|91081249 - gi\|91081249\|ref\|XP_975650.1\| PREDICTED: similar to AGAP000767-PA [Tribolium castaneum]	202.0	[0..21]	[198..2]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKVGADPS SAYDKEIGNN LNNDDSSFLG NIIREILYSP MNLALLAIIC FLVYKIVRDR  60
   61 TEVPSVGVAK PSEPELPKIR R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFTVKELRQY DGTQPDGRVL VAVNGSVYDV SKGRRFYGPG GPYATFAGRD ASRNLATFSV  60
   61 VSIDKDEYDD LSDLSAVEMD SVREWEMQFK EKYELVGKLL RKGEEPTNYD DDEDEENVNN 120
  121 DEQERKNLPK SKTETDDTKQ EKESHILQSN VTNKNNAQDQ ATPSTDC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1j03A
Description:	Solution structure of a putative steroid-binding protein from Arabidopsis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.05227276400356	bayes_pls_golite062009
binding	0.187915229185258	bayes_pls_golite062009
steroid binding	0.177535173083536	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: