YRC Public Data Repository - Protein Structure Prediction

Protein:	MSBP-PB, MSBP-PA...
Organism:	Drosophila melanogaster
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSBP-PB, MSBP-PA....

Description	E-value	Query Range	Subject Range
gi\|185134138, gi... - gi\|25046107\|gb\|AAL49963.1\| progestin membrane receptor component 1 [Oncorhynchus mykiss], gi\|1851341...	219.0	[0..23]	[202..5]
PGRC2_MOUSE - Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2	210.0	[0..40]	[203..49]
PGRC2_RAT - Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1	210.0	[0..40]	[203..49]
gi\|21555444, gi\|... - gi\|4960156\|gb\|AAD34616.1\|AF153284_1 putative progesterone-binding protein homolog [Arabidopsis thali...	208.0	[0..39]	[225..20]
gi\|109075624 - gi\|109075624\|ref\|XP_001082791.1\| PREDICTED: similar to progesterone membrane binding protein [Macaca...	208.0	[0..40]	[203..79]
gi\|61859954 - gi\|61859954\|ref\|XP_613630.1\| PREDICTED: similar to progesterone membrane binding protein [Bos taurus...	207.0	[0..40]	[203..79]
gi\|57100531 - gi\|57100531\|ref\|XP_533292.1\| PREDICTED: similar to progesterone membrane binding protein [Canis fami...	206.0	[0..40]	[203..55]
gi\|91081249 - gi\|91081249\|ref\|XP_975650.1\| PREDICTED: similar to AGAP000767-PA [Tribolium castaneum]	202.0	[0..21]	[198..2]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKVGADPS SAYDKEIGNN LNNDDSSFLG NIIREILYSP MNLALLAIIC FLVYKIVRDR  60
   61 TEVPSVGVAK PSEPELPKIR R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFTVKELRQY DGTQPDGRVL VAVNGSVYDV SKGRRFYGPG GPYATFAGRD ASRNLATFSV  60
   61 VSIDKDEYDD LSDLSAVEMD SVREWEMQFK EKYELVGKLL RKGEEPTNYD DDEDEENVNN 120
  121 DEQERKNLPK SKTETDDTKQ EKESHILQSN VTNKNNAQDQ ATPSTDC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1j03A
Description:	Solution structure of a putative steroid-binding protein from Arabidopsis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.05227276400356	bayes_pls_golite062009
binding	0.187915229185258	bayes_pls_golite062009
steroid binding	0.177535173083536	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: