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View Structure Prediction Details

Protein: Scamp-PA, FBpp03...
Organism: Drosophila melanogaster
Length: 343 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Scamp-PA, FBpp03....

Description E-value Query
Range
Subject
Range
SCAM1_RAT - Secretory carrier-associated membrane protein 1 OS=Rattus norvegicus GN=Scamp1 PE=1 SV=1
448.0 [0..3] [342..1]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSGLDENP FGEPNLDNPF ADPAIQQARR LQSGAALVSL EDYNPFEEQA KPQLQINSTN  60
   61 TAAVVQPLSQ NIPPPQTSSL GASAPSTSIQ ITSEELQRRQ EELDRKAAEL DRREQQLQGN 120
  121 V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [122-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQLNNWPPLP DNFCVKPCFY QDFEVEIPPE FQKLVKRLYY IWIFYTMTLL ANVIGGLILL  60
   61 FHAGEFETFF LAIFYTMLFS PASYVCWFRP AYKAFRNDSS FNFMVFFFIY FFQTLYSIVQ 120
  121 AVGFNKMGYC GFITAIGQFD GQASGIIVGI LLLNVAFCFT AVAVANVLMI TKIHSIYRST 180
  181 GASMAKAQAE FTTEFLRNQH VQEAASSAVN TAINSQFNNS RY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 111.376751
Match: PF04144.4
Description: No description for PF04144.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle