YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpS25-PA
Organism:	Drosophila melanogaster
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpS25-PA.

Description	E-value	Query Range	Subject Range
gi\|55234524, gi\|... - gi\|58393921\|ref\|XP_320391.2\| ENSANGP00000014061 [Anopheles gambiae str. PEST], gi\|55234524\|gb\|EAA004...	306.0	[0..1]	[167..1]
gi\|194105637, gi... - gi\|195165410\|ref\|XP_002023532.1\| GL20418 [Drosophila persimilis], gi\|194105637\|gb\|EDW27680.1\| GL2041... gi\|54643127\|gb\|E... - GA12964-PA [Drosophila pseudoobscura], GA12964 [Drosophila pseudoobscura pseudoobscura] gi\|125981625, gi... - gi\|54643127\|gb\|EAL31871.1\| GA12964 [Drosophila pseudoobscura pseudoobscura], gi\|125981625\|ref\|XP_001...	297.0	[0..1]	[167..1]
gi\|157127059, gi... - gi\|157127059\|ref\|XP_001654783.1\| mitochondrial ribosomal protein S25 [Aedes aegypti], gi\|108884488\|g...	287.0	[0..1]	[167..1]
gi\|39583750, gi\|... - gi\|39583750\|emb\|CAE63854.1\| Hypothetical protein CBG08414 [Caenorhabditis briggsae], gi\|187032767\|em... gi\|157758683 - gi\|157758683\|ref\|XP_001671685.1\| Hypothetical protein CBG08414 [Caenorhabditis briggsae AF16]	286.0	[0..1]	[164..1]
CE22547 - status:Confirmed UniProt:Q9N361 protein_id:AAF60793.1	285.0	[0..1]	[164..1]
gi\|10440375 - gi\|10440375\|dbj\|BAB15723.1\| FLJ00023 protein [Homo sapiens]	284.0	[0..1]	[167..20]
RT25_BOVIN - 28S ribosomal protein S25, mitochondrial OS=Bos taurus GN=MRPS25 PE=1 SV=2	281.0	[0..1]	[167..1]
gi\|109098041 - gi\|109098041\|ref\|XP_001091560.1\| PREDICTED: similar to Mitochondrial 28S ribosomal protein S25 (S25m...	277.0	[0..1]	[167..30]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFMKGREPI RRTLKYLNAG KLVLKDKVRI FSVNYNTYGA HHAGARDFVF WNIPQIQFKN  60
   61 PEVQVLTLKN MTPSPFVRCY FDDGRDMLID LDSRNRNDII DHLVKVVGKT REQLDAEERL 120
  121 KESKDNPANF GYGCGRHCIC EIPGQVPCPG TVPLPDHMRG KILFAPK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.44
Match:	1s3aA
Description:	NMR Solution Structure of Subunit B8 from Human NADH-Ubiquinone Oxidoreductase Complex I (CI-B8)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.646676412582618	bayes_pls_golite062009
transcription regulator activity	0.374519363311304	bayes_pls_golite062009
binding	0.310784153497749	bayes_pls_golite062009
protein binding	0.191955497059338	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: