| Protein: | tomosyn-PA, tomo... |
| Organism: | Drosophila melanogaster |
| Length: | 1173 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tomosyn-PA, tomo....
| Description | E-value | Query Range |
Subject Range |
|
|
786.0 | [0..42] | [1173..1] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MKKFTFKGVL DGFRQSVQPQ ATRQEQEIQE QLKADHFTLK KTFRHGFPYS PTSFAFDPVQ 60
61 KLLAIGDKSG YIRILG
|
| Detection Method: |  |
| Confidence: | 72.69897 |
| Match: | 1vyhC |
| Description: | PAF-AH Holoenzyme: Lis1/Alfa2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [77-415] |
1 11 21 31 41 51
| | | | | |
1 RPGVDAHAKH EGESECAVLF AQFLVNEGAL VTVTADDTIH LWSIRQKTPR IVQSLKFQRE 60
61 RVTCIHLPVG SKWLYVGTEK GNIHVVHIDT FALSGYIINW NKAIEVVRTS HPGAVIALCD 120
121 NPLDANKLLI AFECGLLVLW DLKAKCAELR WQAAEAVKSL AWHYEGKYFV SSHTDGSICS 180
181 WPTKPQAKPQ SQVCPHAKIN KDGNAEKCKP IYKVDLKSSA TGETFTIFSG GMPSEKGSKS 240
241 NCITVMVGKA TTVLEMEHAV CDFITLCENP WPCETQEPYA IAVLLQYDLV LIDLLTPGFP 300
301 CFESPYPMDL HESPVTCCTY LTDCPSDLVP AFYSVGRTT
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 1l0qA |
| Description: | Surface layer protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.66964148100475 | bayes_pls_golite062009 |
| protein binding | 0.931624635835922 | bayes_pls_golite062009 |
| transporter activity | 0.711149297585691 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.517650155593165 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.276105437109391 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.113736784801445 | bayes_pls_golite062009 |
|
Region A: Residues: [416-625] |
1 11 21 31 41 51
| | | | | |
1 TSKKSCFSER EWPISGGEWS PASCSYSEIV ITGHQDGSLK FWDSGAGTLQ ILYKLKTAKM 60
61 FEKPRSHVAH SHPESDNPLA VHLIFLCSES RRLCVAGAMG QVMLFKFRKV ESTSEVLVLE 120
121 IPILYENFDD IYGTSPECDF LTGHQVQKAE SSDSDKTAEC SLKVRNGAQR KPPGFQSQLV 180
181 CLTTGPNRRN VQVTSLCISS SYGLMAYGTE
|
| Detection Method: | |
| Confidence: | 14.522879 |
| Match: | 1s4uX |
| Description: | Crystal Structure analysis of the beta-propeller protein Ski8p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [626-716] |
1 11 21 31 41 51
| | | | | |
1 YGLVIIDIIQ KICLLSVACP DLYGAHDPYS RTPKSPKRIE NKEEQSRSPS SDQVNKLDGT 60
61 FSRSRSSSMS SIDMSSSESV TCLAFIESYA K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [717-937] |
1 11 21 31 41 51
| | | | | |
1 RNDILTLVPT LWIGTSFGSI LTLFITMPER DVRKSQPVLI TINGGPVVRL KGSITSMSFL 60
61 DSYGSIIPYT FETWRDEKRD NKDRTPTKSS SRTSPTFTPT TANTLSNTSV AGGASAGGGA 120
121 GGGGGAGGGA ASGGAAAGGP AGGGAGAGSA AGAAGGVGSG VTSGGGMSSS SASSSGISGS 180
181 VSTGLETLTD RQYIVIASEK QTKVFDVANQ CCINRIQLSE M
|
| Detection Method: | |
| Confidence: | 0.97 |
| Match: | 1wckA |
| Description: | Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [938-1097] |
1 11 21 31 41 51
| | | | | |
1 DFAVKAETIT MKDGSCLATY LSNGHLMVHS LPSLKLLLDT DFLPLMELSF QTKCKQGIVD 60
61 PMLSIWGQQI IVHEDTTQIS KIFCFSHKGH GLYMASPTEI QKFTISSEFC QFILEMMGEL 120
121 YTVHEMPEQP KEGFFKGLFG GGAKLLDREE LFGEQSGKPN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1098-1173] |
1 11 21 31 41 51
| | | | | |
1 RSVARHIPGP NLEQLGQRAS TAASEISRAH QLAMERGEKL NLLEERAERM ANTAQDFSGT 60
61 AHQLMLKYKD KKWYQL
|
| Detection Method: | |
| Confidence: | 19.09691 |
| Match: | 1urqA |
| Description: | Crystal structure of neuronal Q-SNAREs in complex with R-SNARE motif of Tomosyn |
Matching Structure (courtesy of the PDB): |
|
