| Protein: | Gga-PB |
| Organism: | Drosophila melanogaster |
| Length: | 660 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Gga-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
357.0 | [0..3] | [660..4] |
|
Region A: Residues: [1-155] |
1 11 21 31 41 51
| | | | | |
1 MTTDESIMEE MLERATNPAQ KIDELGVQMF CIVVKSNAQL VHKAQEMIVA KVRSTNVTEA 60
61 TRAISLLEEC MTQCGDDFQD EASKFRFLNE LIRLVSKKYK GAETPHEVKQ RIMECLLLWT 120
121 TEFPQRQKIR DAYDMLRKEG DIEHGTTEAA VAKRE
|
| Detection Method: |  |
| Confidence: | 53.522879 |
| Match: | 1py1A |
| Description: | Complex of GGA1-VHS domain and beta-secretase C-terminal phosphopeptide |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| clathrin binding | 2.43251621028184 | bayes_pls_golite062009 |
| protein binding | 2.16467447169895 | bayes_pls_golite062009 |
| binding | 1.8321225578924 | bayes_pls_golite062009 |
| phosphoinositide binding | 0.87586037360588 | bayes_pls_golite062009 |
| phospholipid binding | 0.84481265656013 | bayes_pls_golite062009 |
| lipid binding | 0.176990783274449 | bayes_pls_golite062009 |
|
Region A: Residues: [156-321] |
1 11 21 31 41 51
| | | | | |
1 SVLGTIDEAM FAKLIKSNNP ENFKRANLLL QYRMAQEARR NDLLAQHRLV LCEVQETMQL 60
61 LNQMLDTYDP ANQDVSETLH ELYKSCKKHK PIFQHLPQLL DDSDAQLVAD TLDANCALLA 120
121 TMQRYKLLVP SPTRSTAAAL TTSAPTVASS VKSTASSTTA TTSSNN
|
| Detection Method: | |
| Confidence: | 13.522879 |
| Match: | 1wrdA |
| Description: | Crystal structure of Tom1 GAT domain in complex with ubiquitin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [322-437] |
1 11 21 31 41 51
| | | | | |
1 AQLLNELLGD LLIDGSNKAA TTATTSLPNA AASGSNPLAD LSDIFSSALA ESEAKQQSQP 60
61 FQNATTLLEP QVISQGTTTE ALANGNGGSA SKVPETIRKM PQIDMLSEEL FQQILP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [438-528] |
1 11 21 31 41 51
| | | | | |
1 TQDRMPSFKR DPEKITLNDL ARERMHIKAP EEPTTANDPA SDSAPAIATA TATVDSIDDV 60
61 PLLSDDVEKK DEAVVAPVTV VPPAKPLSEI N
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [529-660] |
1 11 21 31 41 51
| | | | | |
1 VELDNIQATG EQRIVLDDDD MQLSLNFTSD RPGHRVSVIV ISAQNKSRQP VRDFQFEASV 60
61 KKPCKVRLLT PTDSQMPPHK PFRPATPINQ VMLLLNPTGK AVDVTCIVGY KLGDDPDPIK 120
121 ESIVAKGIDY VD
|
| Detection Method: | |
| Confidence: | 18.30103 |
| Match: | 1p4uA |
| Description: | ADP-ribosylation factor binding protein Gga3 domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.57801165255065 | bayes_pls_golite062009 |
| binding | 1.2747736774085 | bayes_pls_golite062009 |
| transporter activity | 0.169557557237959 | bayes_pls_golite062009 |
