YRC Public Data Repository - Protein Structure Prediction

Protein:	CG1789-PA
Organism:	Drosophila melanogaster
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG1789-PA.

Description	E-value	Query Range	Subject Range
gi\|31209297, gi\|... - gi\|31209297\|ref\|XP_313615.1\| ENSANGP00000013368 [Anopheles gambiae str. PEST], gi\|30176757\|gb\|EAA091... AGAP004336-PA - UTP11-like, U3 small nucleolar ribonucleoprotein\|protein_coding\|2R:54821708:54822466:1\|gene:AGAP0043...	216.0	[0..1]	[237..1]
gi\|157818659, gi... - gi\|27716127\|ref\|XP_233498.1\| PREDICTED: similar to UTP11-like, U3 small nucleolar ribonucleoprotein,...	206.0	[0..2]	[237..3]
UTP11_MOUSE - Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus GN=Utp11l PE=2 SV=1	205.0	[0..2]	[237..3]
gi\|197101757 - gi\|197101757\|ref\|NP_001126408.1\| UTP11-like, U3 small nucleolar ribonucleoprotein [Pongo abelii] gi\|55731348 - gi\|55731348\|emb\|CAH92388.1\| hypothetical protein [Pongo abelii]	204.0	[0..2]	[237..3]
UTP11L - UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	204.0	[0..2]	[237..3]
gi\|55586846 - gi\|55586846\|ref\|XP_513332.1\| PREDICTED: UTP11-like, U3 small nucleolar ribonucleoprotein, [Pan trogl...	203.0	[0..2]	[237..3]
gi\|108874319, gi... - gi\|157123647\|ref\|XP_001660244.1\| NBP2b protein, putative [Aedes aegypti], gi\|108874319\|gb\|EAT38544.1...	198.0	[0..1]	[237..1]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSWKNASKS NQKVHRERHQ PESRQHLGFL EKKKDYKKRA IDAQKKQKTL KLLYRRAQNK  60
   61 NPDEFYHHMI NSKLSNDEHH EKDTKDEHTP EQLALMQTQD LKYVVMKRTM ERKKIERLKA 120
  121 SLVDVDAIKG AANKRIKFDE DGYMELDMGE WLLKHDDEEE EEEKKKKSKT TEPNPIKQQR 180
  181 INELKKREQR ERELGIVQQK IQLKNTLKQP RLLKPRKIKP GTKDSAPVYK FRYERKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits