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View Structure Prediction Details

Protein: NELF-B-PA
Organism: Drosophila melanogaster
Length: 594 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NELF-B-PA.

Description E-value Query
Range
Subject
Range
gi|117645402, gi... - gi|168273188|dbj|BAG10433.1| negative elongation factor B [synthetic construct], gi|117645402|emb|CA...
COBRA1 - cofactor of BRCA1
HGNC:24324|MIM:6... - of BRCA1
983.0 [0..14] [589..4]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMSTPAKNN NGTGLEDVNI PGQAYLREAL TSCTDPLKAI ESFQLENGVL LPSLRPMLPL  60
   61 LDLHGVRRLD FHTSLMEELR DKLIAHINEM GQKEPRERD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKLKELLVKS FPVVRVKSLR PVVMAILRNT QHIDDKYLKI LVRDRELYAD TDTEVKRQIW  60
   61 RDNQSLFGDE VSPLLSQYIR EKEHILFDHT NLNNLFFHPT PKVRRQGEVV QKLANMIGTS 120
  121 VKLYDMVLQF 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [230-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRTLFLRTRN VHYCTLRAEL LMALHDLEVQ EIISIDPCHK FTWCLDACIR EKNVDIKRSR  60
   61 ELQGFLDNIK RGQEQVLGDL SMTLCDPYAI NFLATSAIKI LHHLINNEGM PRDNQILILL 120
  121 LRMLALGLSA WVMIDSQDFK EPKLDCQVVT KFLPALMSLM VDDQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [394-594]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CRSLHAKLPP DERESALTTI EHSGPAPDAV EAYIQESSVA SILAMYYTLH TARLKDRVGV  60
   61 LRVLAILSAC KDDRAYEDPF LHSLIALLIP MSEEFATEDF CTTLFDEFIF AGLTRENVTS 120
  121 RHMLKLLWYV HNKLPAGRLA TLMKAMQPTT AHNEHIHKLY EILQERIGTG AAETPVIEAP 180
  181 PMEFDSPLKS VPTPGPHYNV Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle