YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309040, CG3...
Organism:	Drosophila melanogaster
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309040, CG3....

Description	E-value	Query Range	Subject Range
gi\|194187422, gi... - gi\|38048455\|gb\|AAR10130.1\| similar to Drosophila melanogaster CG3446 [Drosophila yakuba], gi\|1954699...	237.0	[0..1]	[154..1]
gi\|54643921, gi\|... - gi\|54643921\|gb\|EAL32664.1\| GA17457 [Drosophila pseudoobscura pseudoobscura], gi\|125983680\|ref\|XP_001... gi\|125983680\|ref... - GA17457-PA [Drosophila pseudoobscura], GA17457 [Drosophila pseudoobscura pseudoobscura]	230.0	[0..1]	[154..1]
gi\|12005918, gi\|... - gi\|21361822\|ref\|NP_057049.3\| cell death-regulatory protein GRIM19 [Homo sapiens], gi\|12005918\|gb\|AAG...	228.0	[0..1]	[153..65]
gi\|111662445 - gi\|111662445\|gb\|ABH12254.1\| mitochondrial complex I subunit Grim19 [Gorilla gorilla] NDUAD_GORGO - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 ...	217.0	[0..11]	[153..7]
NDUAD_PANTR - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=...	216.0	[0..11]	[153..7]
NDUAD_MACFA - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis GN=NDUFA13 PE=2...	214.0	[0..1]	[153..1]
NDUAD_PONPY - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3 NDUAD_PONAB - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo abelii GN=NDUFA13 PE=2 SV=3	214.0	[0..11]	[153..7]
NDUAD_MOUSE - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus GN=Ndufa13 PE=1 SV=3	212.0	[0..11]	[153..7]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAVPHCPP KQDLPPPGGY KKIPFARVPP KSYFTGFTTI GTYVVVTAVG LGIYYLTAKK  60
   61 VKRDEIEMRS AQNVIFPILV AERDREFLRQ LRRNRDEEAE LMKNVPGWEV GTWYGEPVFK 120
  121 TLPEDTLVTP IFKEFYAHSD WKSYAKRAHL KLWS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	106.39794
Match:	PF06212.3
Description:	No description for PF06212.3 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits