YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309040, CG3...
Organism:	Drosophila melanogaster
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309040, CG3....

Description	E-value	Query Range	Subject Range
gi\|194187422, gi... - gi\|38048455\|gb\|AAR10130.1\| similar to Drosophila melanogaster CG3446 [Drosophila yakuba], gi\|1954699...	237.0	[0..1]	[154..1]
gi\|54643921, gi\|... - gi\|54643921\|gb\|EAL32664.1\| GA17457 [Drosophila pseudoobscura pseudoobscura], gi\|125983680\|ref\|XP_001... gi\|125983680\|ref... - GA17457-PA [Drosophila pseudoobscura], GA17457 [Drosophila pseudoobscura pseudoobscura]	230.0	[0..1]	[154..1]
gi\|12005918, gi\|... - gi\|21361822\|ref\|NP_057049.3\| cell death-regulatory protein GRIM19 [Homo sapiens], gi\|12005918\|gb\|AAG...	228.0	[0..1]	[153..65]
gi\|111662445 - gi\|111662445\|gb\|ABH12254.1\| mitochondrial complex I subunit Grim19 [Gorilla gorilla] NDUAD_GORGO - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 ...	217.0	[0..11]	[153..7]
NDUAD_PANTR - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=...	216.0	[0..11]	[153..7]
NDUAD_MACFA - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis GN=NDUFA13 PE=2...	214.0	[0..1]	[153..1]
NDUAD_PONPY - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3 NDUAD_PONAB - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo abelii GN=NDUFA13 PE=2 SV=3	214.0	[0..11]	[153..7]
NDUAD_MOUSE - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus GN=Ndufa13 PE=1 SV=3	212.0	[0..11]	[153..7]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAVPHCPP KQDLPPPGGY KKIPFARVPP KSYFTGFTTI GTYVVVTAVG LGIYYLTAKK  60
   61 VKRDEIEMRS AQNVIFPILV AERDREFLRQ LRRNRDEEAE LMKNVPGWEV GTWYGEPVFK 120
  121 TLPEDTLVTP IFKEFYAHSD WKSYAKRAHL KLWS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	106.39794
Match:	PF06212.3
Description:	No description for PF06212.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.563	N/A	N/A	a.142.1	PTS-regulatory domain, PRD
View	Download	0.453	N/A	N/A	a.142.1	PTS-regulatory domain, PRD
View	Download	0.420	N/A	N/A	a.142.1	PTS-regulatory domain, PRD
View	Download	0.398	N/A	N/A	a.142.1	PTS-regulatory domain, PRD
View	Download	0.393	N/A	N/A	a.60.9	lambda integrase-like, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits