YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0310166, CHO...
Organism:	Drosophila melanogaster
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0310166, CHO....

Description	E-value	Query Range	Subject Range
gi\|109066641, gi... - gi\|109066643\|ref\|XP_001091631.1\| PREDICTED: similar to transmembrane emp24 protein transport domain ...	226.0	[0..11]	[208..16]
TMED9 - transmembrane emp24 protein transport domain containing 9	224.0	[0..5]	[208..18]
gi\|149047669, gi... - gi\|27697481\|ref\|XP_223611.1\| PREDICTED: similar to transmembrane emp24 protein transport domain cont...	222.0	[0..5]	[208..12]
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1	221.0	[0..5]	[208..12]
gi\|114613157 - gi\|114613157\|ref\|XP_001145929.1\| PREDICTED: transmembrane emp24 protein transport domain containing ...	221.0	[0..18]	[208..23]
gi\|47228487 - gi\|47228487\|emb\|CAG05307.1\| unnamed protein product [Tetraodon nigroviridis]	219.0	[0..5]	[204..1]
gi\|125981329, gi... - gi\|54642982\|gb\|EAL31726.1\| GA17526-PA [Drosophila pseudoobscura], gi\|125981329\|ref\|XP_001354671.1\| G...	218.0	[0..1]	[205..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESTLAKVLL LVGSLLILCR TSHAFIVSVD AHNEECFFEN VEGGTKFGVT FEVIDGGFLD  60
   61 VDIKISGPDN HVMHESEKES SGKYTFVAPA KGTYTVCFNN ERSSMTPKLV MFSIDVGDAP 120
  121 QRAPGAPGEE EV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.987
Match:	2yrlA
Description:	No description for 2yrlA was found.

Predicted Domain #2

Region A:
Residues: [133-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHTKLEDMIR ELSGTLTSVK HEQEYMHVRD KIHRSVNENT NSRVVLWSTF EALVLVLMTV  60
   61 GQVYYLKRFF EVKRVV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits