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View Structure Prediction Details

Protein: Scgdelta-PA, FBp...
Organism: Drosophila melanogaster
Length: 404 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Scgdelta-PA, FBp....

Description E-value Query
Range
Subject
Range
gi|34874262, gi|... - gi|55741776|ref|NP_001006994.1| gamma sarcoglycan [Rattus norvegicus], gi|53734260|gb|AAH83748.1| Sa...
gi|55741776 - ref|NP_001006994.1| gamma sarcoglycan [Rattus norvegicus]
412.0 [0..109] [403..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAAGSSEIT DFGPHSRQLT AGNTPKRPNK ASSHRPGSGS GPGPMTTGGT SSASGNGNSG  60
   61 GALNAIPTTK VGSGGGGGGA MSATTVTATT GKATVSHGHS HGHALG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSETRSGRSA AAGRSNVDGF VGGIETYLGL IGWRKKCLYT LLLLLMLLII TNLVLTLWIL  60
   61 KVMEFSTEGM GQLKIVPGGI QLSGQAIIMD MLRASTIRSR HGQPISIESS RNFSINTRDP 120
  121 NGMIENHLFL GH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [239-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKFECLSAGF RINDTNGRSL FSVNRDEVTI GAHALRIDGE GGAVFRESVQ TPHVRAEPGR  60
   61 ELRLESPTRQ LEMTAAKDIN LQSRAGGIEV VALEDVKFRA LDGSLRLESS KILMPNLRTA 120
  121 QPPILGTAQS RDHMHRVFQL CACSNGKLFL AAPHSICAGD DSTVCR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle