YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Scgdelta-PA, FBp...
Organism: Drosophila melanogaster
Length: 404 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Scgdelta-PA, FBp....

Description E-value Query
Range
Subject
Range
gi|34874262, gi|... - gi|55741776|ref|NP_001006994.1| gamma sarcoglycan [Rattus norvegicus], gi|53734260|gb|AAH83748.1| Sa...
gi|55741776 - ref|NP_001006994.1| gamma sarcoglycan [Rattus norvegicus]
412.0 [0..109] [403..1]

Back

Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAAGSSEIT DFGPHSRQLT AGNTPKRPNK ASSHRPGSGS GPGPMTTGGT SSASGNGNSG  60
   61 GALNAIPTTK VGSGGGGGGA MSATTVTATT GKATVSHGHS HGHALG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSETRSGRSA AAGRSNVDGF VGGIETYLGL IGWRKKCLYT LLLLLMLLII TNLVLTLWIL  60
   61 KVMEFSTEGM GQLKIVPGGI QLSGQAIIMD MLRASTIRSR HGQPISIESS RNFSINTRDP 120
  121 NGMIENHLFL GH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [239-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKFECLSAGF RINDTNGRSL FSVNRDEVTI GAHALRIDGE GGAVFRESVQ TPHVRAEPGR  60
   61 ELRLESPTRQ LEMTAAKDIN LQSRAGGIEV VALEDVKFRA LDGSLRLESS KILMPNLRTA 120
  121 QPPILGTAQS RDHMHRVFQL CACSNGKLFL AAPHSICAGD DSTVCR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle