YRC Public Data Repository - Protein Structure Prediction

Protein:	CG1890-PA
Organism:	Drosophila melanogaster
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG1890-PA.

Description	E-value	Query Range	Subject Range
gi\|109483017 - gi\|109483017\|ref\|XP_001068383.1\| PREDICTED: similar to tubulin cofactor a (predicted) [Rattus norveg...	120.0	[0..7]	[107..18]
gi\|55233244, gi\|... - gi\|58394716\|ref\|XP_320905.2\| ENSANGP00000017649 [Anopheles gambiae str. PEST], gi\|55233244\|gb\|EAA015...	114.0	[0..1]	[109..1]
gi\|108878086, gi... - gi\|157112417\|ref\|XP_001657525.1\| cofactor A, putative [Aedes aegypti], gi\|108878086\|gb\|EAT42311.1\| c...	112.0	[0..1]	[109..1]
gi\|30585151, gi\|... - gi\|61370238\|gb\|AAX43460.1\| tubulin-specific chaperone a [synthetic construct], gi\|30585151\|gb\|AAP368...	110.0	[0..1]	[107..1]
gi\|61360418, gi\|... - gi\|61360418\|gb\|AAX41859.1\| tubulin-specific chaperone a [synthetic construct], gi\|61360412\|gb\|AAX418... gi\|114599534, gi... - gi\|114599534\|ref\|XP_001142906.1\| PREDICTED: tubulin-specific chaperone a [Pan troglodytes], gi\|11459... TBCA - tubulin folding cofactor A	109.0	[0..1]	[107..1]
TBCA_MOUSE - Tubulin-specific chaperone A OS=Mus musculus GN=Tbca PE=1 SV=3	109.0	[0..1]	[107..1]
gi\|25408070 - gi\|25408070\|pir\|\|B84708 probable TCP1-chaperonin cofactor A [imported] - Arabidopsis thaliana	109.0	[0..6]	[85..4]
gi\|114688094 - gi\|114688094\|ref\|XP_520997.2\| PREDICTED: similar to cofactor A protein [Pan troglodytes]	108.0	[0..1]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDPRIRQLV IKSGVVRRLT REKYCYAKEV LTEQARLEKL RGDGADDHVL RKQEEVIQEC  60
   61 IMMVPDSKRR LQKEYEVLEK YLADEQDLIE TDSYKKAAEI LKDAKAELET

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1h7cA
Description:	Tubulin chaperone cofactor A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chaperone binding	1.47792074338377	bayes_pls_golite062009
binding	1.45739561719433	bayes_pls_golite062009
protein binding	1.10534436186662	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: