Protein: | Med-PB |
Organism: | Drosophila melanogaster |
Length: | 697 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Med-PB.
Description | E-value | Query Range |
Subject Range |
|
520.0 | [0..1] | [697..1] |
Region A: Residues: [1-166] |
1 11 21 31 41 51 | | | | | | 1 MGGGSGACPP AHMYGAVAPQ DIIVRDMVQM PPPPSNAPTS ADACLSIVHS LMCHRQGGES 60 61 EGFAKRAIES LVKKLKEKRD ELDSLITAIT TNGAHPSKCV TIQRTLDGRL QVAGRKGFPH 120 121 VIYARIWRWP DLHKNELKHV KYCAFAFDLK CDSVCVNPYH YERVVS |
Detection Method: | |
Confidence: | 47.045757 |
Match: | 1mhdA |
Description: | SMAD MH1 domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [167-399] |
1 11 21 31 41 51 | | | | | | 1 PGIDLSGLSL QSGPSRLVKD EYSAGPLVGS MDIDGNDIGT IQHHPTQMVG PGGYGYPQGP 60 61 SEYAVPHGMP GMPGPMNPGP VMAPPPPPQQ AQNPQGNGVH HTQANSPTDP ASALAMQQQQ 120 121 QQQQQQQQQQ QQQQQQSGGV PNGSVNAGGG AAAGGQYYGQ PPPVSQMQGA GGGGTSVAPS 180 181 VHAQQNGYVS QPGSAGSAPV GGGGVFGTAQ PTPQQPQQPP TGVQANTGSA GAQ |
Detection Method: | |
Confidence: | 5.0 |
Match: | 1m2vB |
Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [400-456] |
1 11 21 31 41 51 | | | | | | 1 AGAGGGAAGT WTGPNTLTYT QSMQPPDPRS LPGGFWNSSL SGDLGSPQQT PPQQQQQ |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [457-697] |
1 11 21 31 41 51 | | | | | | 1 QQQPRLLSRQ PPPEYWCSIA YFELDTQVGE TFKVPSAKPN VIIDGYVDPS GGNRFCLGAL 60 61 SNVHRTEQSE RARLHIGKGV QLDLRGEGDV WLRCLSDNSV FVQSYYLDRE AGRTPGDAVH 120 121 KIYPAACIKV FDLRQCHQQM HSLATNAQAA AAAQAAAVAG VANQQMGGGG RSMTAAAGIG 180 181 VDDLRRLCIL RLSFVKGWGP DYPRQSIKET PCWIEVHLHR ALQLLDEVLH AMPIDGPRAA 240 241 A |
Detection Method: | |
Confidence: | 83.522879 |
Match: | 1ygsA |
Description: | CRYSTAL STRUCTURE OF THE SMAD4 TUMOR SUPPRESSOR C-TERMINAL DOMAIN |
Matching Structure (courtesy of the PDB): |