| Protein: | gammaCop-PA |
| Organism: | Drosophila melanogaster |
| Length: | 879 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gammaCop-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
638.0 | [0..5] | [879..4] |
|
Region A: Residues: [1-595] |
1 11 21 31 41 51
| | | | | |
1 MGSFRREKDD EEDAGPSNAY QNLEKTSVLQ ETRTFNETPV NPRKCIHILT KILYLINQGE 60
61 QLVAREATDC FFAMTKLFQS KDVVLRRMVY LGIKELSSIA EDVIIVTSSL TKDMTGKEDL 120
121 YRAAAIRALC SITDNTMLQA VERYMKQCIV DKNAAVSCAA LVSSLRLANT AGDVVKRWAN 180
181 EAQEALNSDN IMVQYHALGL LYHIRKSDRL AVSKLVNKLT RGSLKSPYAV CMLIRIACKL 240
241 IEEEDIPSEE LSDSPLFTFI ESCLRHKSEM VIYEAAHAIV NLKNTNPRML SPAFSILQLF 300
301 CSSPKATLRF AAVRTLNKVA MTHPAAVTTC NLDLEGLITD SNRSVATLAI TTLLKTGAES 360
361 SVERLMKQIS TFVAEISDEF KVVVVQAICA LCTKYPRKHT VLMNFLSGML REEGGLEYKT 420
421 SIVDTIITII EENADAKESG LSHLCEFIED CEHVSLAVRI LHLLGKEGPF AATPSKYIRF 480
481 IYNRVILESP IVRAAAVTAM AQFGASCPAL LSNILVLLGR CQMDPDDEVR DRATYYLSIL 540
541 NSERPELYKN YIIERENCSL ALLEKSLVEH LNGDVDTRFD ISIVPKAAIV KPVIA
|
| Detection Method: |  |
| Confidence: | 91.69897 |
| Match: | 1w63B |
| Description: | AP1 clathrin adaptor core |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [596-879] |
1 11 21 31 41 51
| | | | | |
1 NDVMLVTSSA PRPPKITREE ESAARLAQLP GIQVLGPIHR STAPIQLTES ETEYTVQCIK 60
61 HIFGQHVVFQ FDCLNTLSDQ ILENVRVELT LPEGFTTRAV IPCPKLPYND LQTTFVIVEF 120
121 PPDAANSIAT FGATLRFVVK DCDPNTGEPE SEEGYDDEYM LEDLELTVAD QIQKTRKNNF 180
181 QVSWDAADSE EWLQAEDTFV LSAVTTLQDA VNTIVKILGL GAANLSENVP EGTHLHTLLC 240
241 SGTFRGGAEI LVRAKLALSE GVTLNLTVRS TDQDVAELIT AAIG
|
| Detection Method: | |
| Confidence: | 75.522879 |
| Match: | 1pzdA |
| Description: | Structural Identification of a conserved appendage domain in the carboxyl-terminus of the COPI gamma-subunit. |
Matching Structure (courtesy of the PDB): |
|
