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View Structure Prediction Details

Protein: FBpp0306575, 5-H...
Organism: Drosophila melanogaster
Length: 564 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0306575, 5-H....

Description E-value Query
Range
Subject
Range
gi|103373 - gi|103373|pir||A38271 serotonin receptor 7 - fruit fly (Drosophila melanogaster)
320.0 [0..1] [564..1]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSGQDWRR HQSHRQHRNH RTQGNHQKLI STATLTLFVL FLSSWIAYAA GKATVPAPLV  60
   61 EGETESATSQ DFNSSSAFLG AIASASSTGS GSGSGSGSGS GSGSGSYGLA SMNSSPIAIV 120
  121 SYQGITS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [128-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNLGDSNTTL VPLSDTPLLL EEFAAGEFVL PPLTSIFVSI VLLIVILGTV VGNVLVCIAV  60
   61 CMVRKLRRPC NYLLVSLALS DLCVALLVMP MALLYEVLEK WNFGPLLCDI WVSFDVLCCT 120
  121 ASILNLCAIS VDRYLAITKP LEYGVKRTPR RMMLCVGIVW LAAACISLPP LLILGNEHED 180
  181 EEGQPICTVC QNFAYQIYAT LGSFYIPLSV MLFVYYQIFR AARRIVLEEK RAQTHLQQAL 240
  241 NGTGSPSAPQ APPLGHTELA SSGNGQRHSS VGNTSLTYST CGGLSSGGGA LAGHGSGGGV 300
  301 SGSTGLLGSP H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.154902
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [439-564]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKKLRFQLAK EKKASTTLGI IMSAFTVCWL PFFILALIRP FETMHVPASL SSLFLWLGYA  60
   61 NSLLNPIIYA TLNRDFRKPF QEILYFRCSS LNTMMRENYY QDQYGEPPSQ RVMLGDERHG 120
  121 ARESFL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.05
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle