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View Structure Prediction Details

Protein: CDase-PA, CDase-...
Organism: Drosophila melanogaster
Length: 704 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDase-PA, CDase-....

Description E-value Query
Range
Subject
Range
gi|60729553, gi|... - gi|60729553|pir||JC7881 ceramidase (EC 3.5.1.23), neutral isoform - fruit fly (Drosophila melanogas...
1048.0 [0..1] [704..1]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSKMAFLA FLAVSFLCGL VSATYKVGVG RADITGPPVE INFMGYANIK QVGRGIHTRV  60
   61 FARAFVVEDE KGNRVAFVSA DAGMMGYGLK REVIKRLQAR YGNIYHNDNV AISGTHTHGA 120
  121 PGGFLMHLLY DISILGFVPQ TFEVMAQGLY LCIKRATDNL VDGRILLSKT TVLNVNINRS 180
  181 PSSYLRNPAE ERAQY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [196-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHDTDKTLTQ LRFVDLENNL LGAFNWYAVH ATSMNNTNRL VTSDNVGYAA LLLEKEYNPN  60
   61 KMPG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [260-475]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGKFVGAFCS SNLGDVSPNI MGPKCSISGN ECDLLTSRCP TGEGDCFASG PGKDMFESTQ  60
   61 ILGQRLADAA LGLLNEQSQE STAREVTGDV RFIHQFVDMP NYNGSTYNPL SRKVDKIRGC 120
  121 QPAMGYSFAA GTTDGPGAFS FEQGTTTDNP MWNFVRDFIA APTQEDIKCH EPKPILLATG 180
  181 RATFPYEWQP KIVSDQLLKI GDVIIAAVPC EFTTMA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [476-550]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRRLRNQIRA AASAVGGIDT EVIIAGLTNI YTSYTVTPEE YQAQRYEAAS TIFGPHTHSI  60
   61 YMDVFERLTK AMMRN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [551-704]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETVDAGPSPP YMNDVMLSLN TGVLFDGHPI NTDFGYVKSQ PNKEYGINET VKVTYISGNP  60
   61 RNNLFTEKTY FTIERKINED RWKVAYTDAS WETKMVWHRT NTILGFSEMD IYWDISPQTL 120
  121 PGEYRIRHSG EYKYILGGKY PYEGLTHSFT VKED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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