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View Structure Prediction Details

Protein: sas-6-PA
Organism: Drosophila melanogaster
Length: 472 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sas-6-PA.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
191.0 [0..100] [467..1839]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPPGSEDSY SAKMDYGKSV VNILPSVEML VNFNGEMTRS SKRSCLLYAE RVDFKELLQL  60
   61 RLTEKSDQRR MYITTVDSAS FQDLKQDQS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNVSFSGFID NVVRMLKDCQ SGKLELHLTT RDQNLSSGRE VHDYYLQFVE IRSFKNLVHL  60
   61 SLPCRSAPLN TVLFYINSML EASHKKQYIL EQSMQQMQAE INAQRAHAER LTTENTNIRE 120
  121 ALAENTRILE EKHAAEVHQY QEKLSKINEQ RSNELERNRR AISGFQAQLD KASLEKAELK 180
  181 SAQEQAEKRC QTLSEELSCC KARVCTLKEQ NDKLHGDVAN IRKHERKLEY KIEDLKQHTV 240
  241 ELQEHIQKGN KEKANIAAEL EAEKKILHTK RQALEMASEE ISKANQIIVK QSQELLNLKK 300
  301 TIAWRTEVAL Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.045757
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [401-472]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEKAVQAKES LLSLRENELR EARITIEKLR EEIPQQLQSM RNFAQGLEQK YSKQILILKE  60
   61 RLAIPTGKEN RR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle