YRC Public Data Repository - Protein Structure Prediction

Protein:	CG7598-PA
Organism:	Drosophila melanogaster
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7598-PA.

Description	E-value	Query Range	Subject Range
gi\|20151259 - gi\|20151259\|gb\|AAM10989.1\| AT05708p [Drosophila melanogaster]	403.0	[0..1]	[296..1]
gi\|54637507\|gb\|E... - GA20469-PA [Drosophila pseudoobscura], GA20469 [Drosophila pseudoobscura pseudoobscura] gi\|54637507, gi\|... - gi\|54637507\|gb\|EAL26909.1\| GA20469 [Drosophila pseudoobscura pseudoobscura], gi\|125773031\|ref\|XP_001...	365.0	[0..1]	[296..1]
gi\|58389135, gi\|... - gi\|58389135\|ref\|XP_316811.2\| ENSANGP00000010307 [Anopheles gambiae str. PEST], gi\|55238013\|gb\|EAA120...	299.0	[0..31]	[296..1]
gi\|157103939, gi... - gi\|157103939\|ref\|XP_001648190.1\| chaperone protein, putative [Aedes aegypti], gi\|108869298\|gb\|EAT335...	297.0	[0..27]	[296..49]
gi\|25530256 - pir\|\|AB2434 hypothetical protein all5026 [imported] - Nostoc sp. (strain PCC 7120) gi\|17134164, gi\|... - gi\|17232518\|ref\|NP_489066.1\| hypothetical protein all5026 [Nostoc sp. PCC 7120], gi\|17134164\|dbj\|BAB...	291.0	[0..13]	[296..122]
gi\|23126852, gi\|... - gi\|23126852\|ref\|ZP_00108736.1\| COG0702: Predicted nucleoside-diphosphate-sugar epimerases [Nostoc pu...	291.0	[0..13]	[296..122]
gi\|75908503, gi\|... - gi\|75908503\|ref\|YP_322799.1\| hypothetical protein Ava_2286 [Anabaena variabilis ATCC 29413], gi\|7570...	287.0	[0..13]	[296..122]
gi\|91087275 - gi\|91087275\|ref\|XP_975544.1\| PREDICTED: similar to CG7598 CG7598-PA [Tribolium castaneum]	287.0	[0..22]	[296..22]
CIA30_CAEBR - Probable complex I intermediate-associated protein 30, mitochondrial OS=Caenorhabditis briggsae GN=n... gi\|157759582 - gi\|157759582\|ref\|XP_001672133.1\| Hypothetical protein CBG11538 [Caenorhabditis briggsae AF16]	283.0	[0..39]	[292..75]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLLRQGLR LGCCLPAVQQ QIHTTAVHRT FWEREKKSGY KTKLPEPSKK QMIMDGLRDL  60
   61 KEEMKLWRQE VKEQFESDPI LVFRPGE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDVVFDFKAP DVLDKWTVTT DADHGEGKST ATLELSAAGA GLFHGQVNSD HTKDGIIKRT  60
   61 GYANIRTKRV RKSFKRETTY DWTQYNMLVM KVRGDGRSYL INLHTEGYFD LMWNDIYHYV 120
  121 LYTRGGPHWQ IAKIPFSKFF LSSKGRVQDR QGAIPLNRVT HFGFSVAAKK GMDGPFGLEI 180
  181 DYVGLEYDPS HREEFAYEMY QTPKYIVAT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.91
Match:	1v0aA
Description:	Family 11 Carbohydrate-Binding Module of cellulosomal cellulase Lic26A-Cel5E of Clostridium thermocellum
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits