YRC Public Data Repository - Protein Structure Prediction

Protein:	CG7598-PA
Organism:	Drosophila melanogaster
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7598-PA.

Description	E-value	Query Range	Subject Range
gi\|20151259 - gi\|20151259\|gb\|AAM10989.1\| AT05708p [Drosophila melanogaster]	403.0	[0..1]	[296..1]
gi\|54637507\|gb\|E... - GA20469-PA [Drosophila pseudoobscura], GA20469 [Drosophila pseudoobscura pseudoobscura] gi\|54637507, gi\|... - gi\|54637507\|gb\|EAL26909.1\| GA20469 [Drosophila pseudoobscura pseudoobscura], gi\|125773031\|ref\|XP_001...	365.0	[0..1]	[296..1]
gi\|58389135, gi\|... - gi\|58389135\|ref\|XP_316811.2\| ENSANGP00000010307 [Anopheles gambiae str. PEST], gi\|55238013\|gb\|EAA120...	299.0	[0..31]	[296..1]
gi\|157103939, gi... - gi\|157103939\|ref\|XP_001648190.1\| chaperone protein, putative [Aedes aegypti], gi\|108869298\|gb\|EAT335...	297.0	[0..27]	[296..49]
gi\|25530256 - pir\|\|AB2434 hypothetical protein all5026 [imported] - Nostoc sp. (strain PCC 7120) gi\|17134164, gi\|... - gi\|17232518\|ref\|NP_489066.1\| hypothetical protein all5026 [Nostoc sp. PCC 7120], gi\|17134164\|dbj\|BAB...	291.0	[0..13]	[296..122]
gi\|23126852, gi\|... - gi\|23126852\|ref\|ZP_00108736.1\| COG0702: Predicted nucleoside-diphosphate-sugar epimerases [Nostoc pu...	291.0	[0..13]	[296..122]
gi\|75908503, gi\|... - gi\|75908503\|ref\|YP_322799.1\| hypothetical protein Ava_2286 [Anabaena variabilis ATCC 29413], gi\|7570...	287.0	[0..13]	[296..122]
gi\|91087275 - gi\|91087275\|ref\|XP_975544.1\| PREDICTED: similar to CG7598 CG7598-PA [Tribolium castaneum]	287.0	[0..22]	[296..22]
CIA30_CAEBR - Probable complex I intermediate-associated protein 30, mitochondrial OS=Caenorhabditis briggsae GN=n... gi\|157759582 - gi\|157759582\|ref\|XP_001672133.1\| Hypothetical protein CBG11538 [Caenorhabditis briggsae AF16]	283.0	[0..39]	[292..75]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLLRQGLR LGCCLPAVQQ QIHTTAVHRT FWEREKKSGY KTKLPEPSKK QMIMDGLRDL  60
   61 KEEMKLWRQE VKEQFESDPI LVFRPGE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDVVFDFKAP DVLDKWTVTT DADHGEGKST ATLELSAAGA GLFHGQVNSD HTKDGIIKRT  60
   61 GYANIRTKRV RKSFKRETTY DWTQYNMLVM KVRGDGRSYL INLHTEGYFD LMWNDIYHYV 120
  121 LYTRGGPHWQ IAKIPFSKFF LSSKGRVQDR QGAIPLNRVT HFGFSVAAKK GMDGPFGLEI 180
  181 DYVGLEYDPS HREEFAYEMY QTPKYIVAT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.91
Match:	1v0aA
Description:	Family 11 Carbohydrate-Binding Module of cellulosomal cellulase Lic26A-Cel5E of Clostridium thermocellum
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits