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View Structure Prediction Details

Protein: CG1951-PA
Organism: Drosophila melanogaster
Length: 835 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG1951-PA.

Description E-value Query
Range
Subject
Range
KS6AA_CHICK - Ribosomal protein S6 kinase 2 alpha OS=Gallus gallus GN=RPS6KA PE=2 SV=1
422.0 [0..19] [699..65]

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Predicted Domain #1
Region A:
Residues: [1-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMINKFYSS AVQTVSTLSG VLPGNNVTRE YEVLEQVCTA GVGLMWKVYN GHKKSTKQEV  60
   61 SVFVFEKKSL ERWSKDDRET MLETLRRGVQ QLTKIRHPHV LTVQHPLEES RDSLAFATEP 120
  121 VFASLANVVG DNVRSEKKLY DVEIRHGLLQ LFDGLQFLHQ DAKIVHRNIS AETIVINKNR 180
  181 SWKLFGFDFC IANQPATDGT PHWPFREYTT SLHVLAQPSL EYTAPELALN SVNTPDSDLF 240
  241 SLGVLIFTIY AGKPLKMFGS DYSSFRRYAN DLNQRKYPPM NAVPSELTES LKALLHPSAN 300
  301 LRPKLHELKQ IAYFQDVGVK TLSYLDSLYQ 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.0
Match: 2fh9A
Description: No description for 2fh9A was found.

Predicted Domain #2
Region A:
Residues: [331-546]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WDNLQKSKFY KGLPQIIPTL PHRVNLHSIL PYLVKEFVNS PMIPFVLPNV LLIAEMSSQR  60
   61 EYCDHILPHL KPIFKLTDPI QILLIFMQKM DLLLKLTPAE EVKQSVLPLL YRSLECDMPQ 120
  121 IQDLCLAVLP TFSTLIDYNA MKNSVLPRIK KLCLQSSNVS VKVNCLISIG KLLENLDKWL 180
  181 VLDEILPFLQ QIQSREPAII MGIIGIYKIA MTNTKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.522879
Match: 2aaoA
Description: Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [547-835]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GITKDVMAHK CIPYLVPLSV ENGLTIAQFN TIISLIKEMM GRVEQEQREK LQQLSTIQRD  60
   61 NKPKDASEIL ANELENSTLS PYGSINGNKI NDDMFSGFTV GQPKAAIGAA IAPAKAREQL 120
  121 KISHNTISAP PAARPDILSS MMQSNLTGLG TITVAAAPPP TTTQMPSNNG WHSANPLVMN 180
  181 HQLASPQASN NNSFSLDDLD PFAGGRPSVG APKANNTNGA NMYTVQQPTV NYIYPTGYSL 240
  241 NSIQQHQQQQ LLGKPSQAPT LQPQTQPLLP TDNQNLNALS QQDILNFLN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle