YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CG5508-PC
Organism: Drosophila melanogaster
Length: 786 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5508-PC.

Description E-value Query
Range
Subject
Range
CG5508-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG5508 (CG5508, FBgn0027579). It is a protein...
510.0 [0..14] [786..78]

Back

Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMEEFHARG WFEEPKTQNS VAHGIGTQNM LELTPHSGQK PFKKLFDWGV LFPYVAQVVR  60
   61 SEKFEYRQVT EIVHNDAVLK HAIKQAAEQT LREQRYAKNG HRLLTRSASG DQEAQEEEDE 120
  121 KRGISYQAIL RKQEQRAISI LKDMGSTLNN GLLAFTSWIL YKLLPCFLS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVVTNTKQIE MLKTATERSP GTPLIFVPLH RSHLDYIMVT WILTNNDIRS PLVAAGNNLQ  60
   61 IPVFGGLLRG LGAFFIKRKI DPVEGKKDVL YRAALHLYLT HALKQGHNVE FFIEGGRTRT 120
  121 GKPCMPKGGI LSVIVNAFMD GSIPDALLVP VSVNYERLVD GNFVREQKGE KKIPESFGKA 180
  181 ISGIWKAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [358-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSNYGLMRID FNEPYSIREL VNSYNKIARE DGNIAKVYKP SARVLQHNQS TSSLYGTDVV  60
   61 CEEHRN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [424-642]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIESISRQVV FDCAAATSVM STNALAFLLL TRFRNGAEEQ ILSEALDDLR NSLSGCKDIG  60
   61 FSGESSQIVA YACDLLGSGL VTRSRDENGR LVIKAVNSVE SFIELAYYSN MLTPHFALSS 120
  121 ILLTTFHSLL PETENKKEAA VSRKKLIDTA LENCQIYRYE FILNKPTQVL ENLLYQQLDD 180
  181 LLISGCVLTE KLHDDLPNGA EGRRLANVLA ECLDEDGYE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [643-786]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVRDGEADEP KLLFASETPS QQRYICEVLA PFAWTYVTVA QSLQILHKNS MLESEFISFV  60
   61 INDLSSKVKR GSCIYAESIS TDSVRNCLKL LEKWSVIEVC NQQGMRLISL NTLYEMSRES 120
  121 LNSIVKKIDA IVPKFNSGYF SVTP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle