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View Structure Prediction Details

Protein: CG5508-PC
Organism: Drosophila melanogaster
Length: 786 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5508-PC.

Description E-value Query
Range
Subject
Range
CG5508-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG5508 (CG5508, FBgn0027579). It is a protein...
510.0 [0..14] [786..78]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMEEFHARG WFEEPKTQNS VAHGIGTQNM LELTPHSGQK PFKKLFDWGV LFPYVAQVVR  60
   61 SEKFEYRQVT EIVHNDAVLK HAIKQAAEQT LREQRYAKNG HRLLTRSASG DQEAQEEEDE 120
  121 KRGISYQAIL RKQEQRAISI LKDMGSTLNN GLLAFTSWIL YKLLPCFLS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVVTNTKQIE MLKTATERSP GTPLIFVPLH RSHLDYIMVT WILTNNDIRS PLVAAGNNLQ  60
   61 IPVFGGLLRG LGAFFIKRKI DPVEGKKDVL YRAALHLYLT HALKQGHNVE FFIEGGRTRT 120
  121 GKPCMPKGGI LSVIVNAFMD GSIPDALLVP VSVNYERLVD GNFVREQKGE KKIPESFGKA 180
  181 ISGIWKAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [358-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSNYGLMRID FNEPYSIREL VNSYNKIARE DGNIAKVYKP SARVLQHNQS TSSLYGTDVV  60
   61 CEEHRN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [424-642]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIESISRQVV FDCAAATSVM STNALAFLLL TRFRNGAEEQ ILSEALDDLR NSLSGCKDIG  60
   61 FSGESSQIVA YACDLLGSGL VTRSRDENGR LVIKAVNSVE SFIELAYYSN MLTPHFALSS 120
  121 ILLTTFHSLL PETENKKEAA VSRKKLIDTA LENCQIYRYE FILNKPTQVL ENLLYQQLDD 180
  181 LLISGCVLTE KLHDDLPNGA EGRRLANVLA ECLDEDGYE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [643-786]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVRDGEADEP KLLFASETPS QQRYICEVLA PFAWTYVTVA QSLQILHKNS MLESEFISFV  60
   61 INDLSSKVKR GSCIYAESIS TDSVRNCLKL LEKWSVIEVC NQQGMRLISL NTLYEMSRES 120
  121 LNSIVKKIDA IVPKFNSGYF SVTP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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