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View Structure Prediction Details

Protein: CG5508-PA, FBpp0...
Organism: Drosophila melanogaster
Length: 850 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5508-PA, FBpp0....

Description E-value Query
Range
Subject
Range
gi|54637991, gi|... - gi|54637991|gb|EAL27393.1| GA18937-PA [Drosophila pseudoobscura], gi|125773993|ref|XP_001358255.1| G...
575.0 [0..1] [850..1]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTTVLNFAQ RVAEISLLGG IEIASVALIV YYIFAKTRAP VIIASLFPNL NLSYRTSYLS  60
   61 KINTIRSDLL VTLRSSNEPK TQNSVAHGIG TQNMLELTPH 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGQKPFKKLF DWGVLFPYVA QVVRSEKFEY RQVTEIVHND AVLKHAIKQA AEQTLREQRY  60
   61 AKNGHRLLTR SASGDQEAQE EEDEKRGISY QAILRKQEQR AISILKDMGS TLNNGLLAFT 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [221-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWILYKLLPC FLSGVVTNTK QIEMLKTATE RSPGTPLIFV PLHRSHLDYI MVTWILTNND  60
   61 IRSPLVAAGN NLQIPVFGGL LRGLGAFFIK RKIDPVEGKK DVLYRAALHL YLTHALKQGH 120
  121 NVEFFIEGGR TRTGKPCMPK GGILSVIVNA FMDGSIPDAL LVPVSVNYER LVDGNFVREQ 180
  181 KGEKKIPESF GKAISGIWKA LKSNYGLMRI DFNE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.045757
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [435-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYSIRELVNS YNKIAREDGN IAKVYKPSAR VLQHNQSTSS LYGTDVVCEE HRNLIESISR  60
   61 QVVFDCAAAT SVMSTNALAF LLLT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [519-694]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFRNGAEEQI LSEALDDLRN SLSGCKDIGF SGESSQIVAY ACDLLGSGLV TRSRDENGRL  60
   61 VIKAVNSVES FIELAYYSNM LTPHFALSSI LLTTFHSLLP ETENKKEAAV SRKKLIDTAL 120
  121 ENCQIYRYEF ILNKPTQVLE NLLYQQLDDL LISGCVLTEK LHDDLPNGAE GRRLAN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [695-850]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLAECLDEDG YEDVRDGEAD EPKLLFASET PSQQRYICEV LAPFAWTYVT VAQSLQILHK  60
   61 NSMLESEFIS FVINDLSSKV KRGSCIYAES ISTDSVRNCL KLLEKWSVIE VCNQQGMRLI 120
  121 SLNTLYEMSR ESLNSIVKKI DAIVPKFNSG YFSVTP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle