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View Structure Prediction Details

Protein: CG5508-PA, FBpp0...
Organism: Drosophila melanogaster
Length: 850 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5508-PA, FBpp0....

Description E-value Query
Range
Subject
Range
gi|54637991, gi|... - gi|54637991|gb|EAL27393.1| GA18937-PA [Drosophila pseudoobscura], gi|125773993|ref|XP_001358255.1| G...
575.0 [0..1] [850..1]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTTVLNFAQ RVAEISLLGG IEIASVALIV YYIFAKTRAP VIIASLFPNL NLSYRTSYLS  60
   61 KINTIRSDLL VTLRSSNEPK TQNSVAHGIG TQNMLELTPH 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGQKPFKKLF DWGVLFPYVA QVVRSEKFEY RQVTEIVHND AVLKHAIKQA AEQTLREQRY  60
   61 AKNGHRLLTR SASGDQEAQE EEDEKRGISY QAILRKQEQR AISILKDMGS TLNNGLLAFT 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [221-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWILYKLLPC FLSGVVTNTK QIEMLKTATE RSPGTPLIFV PLHRSHLDYI MVTWILTNND  60
   61 IRSPLVAAGN NLQIPVFGGL LRGLGAFFIK RKIDPVEGKK DVLYRAALHL YLTHALKQGH 120
  121 NVEFFIEGGR TRTGKPCMPK GGILSVIVNA FMDGSIPDAL LVPVSVNYER LVDGNFVREQ 180
  181 KGEKKIPESF GKAISGIWKA LKSNYGLMRI DFNE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.045757
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [435-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYSIRELVNS YNKIAREDGN IAKVYKPSAR VLQHNQSTSS LYGTDVVCEE HRNLIESISR  60
   61 QVVFDCAAAT SVMSTNALAF LLLT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [519-694]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFRNGAEEQI LSEALDDLRN SLSGCKDIGF SGESSQIVAY ACDLLGSGLV TRSRDENGRL  60
   61 VIKAVNSVES FIELAYYSNM LTPHFALSSI LLTTFHSLLP ETENKKEAAV SRKKLIDTAL 120
  121 ENCQIYRYEF ILNKPTQVLE NLLYQQLDDL LISGCVLTEK LHDDLPNGAE GRRLAN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [695-850]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLAECLDEDG YEDVRDGEAD EPKLLFASET PSQQRYICEV LAPFAWTYVT VAQSLQILHK  60
   61 NSMLESEFIS FVINDLSSKV KRGSCIYAES ISTDSVRNCL KLLEKWSVIE VCNQQGMRLI 120
  121 SLNTLYEMSR ESLNSIVKKI DAIVPKFNSG YFSVTP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle