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View Structure Prediction Details

Protein: Gr98c-PA
Organism: Drosophila melanogaster
Length: 408 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Gr98c-PA.

Description E-value Query
Range
Subject
Range
gi|54638054, gi|... - gi|54638054|gb|EAL27456.1| GA15973-PA [Drosophila pseudoobscura], gi|125774119|ref|XP_001358318.1| G...
202.0 [0..9] [393..1]

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Predicted Domain #1
Region A:
Residues: [1-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMEAKRSRL LTTARPYLQV LSLFGLTPPA EFFTRTLRKR RRFCWMAGYS LYLIAILLMV  60
   61 FYEFHANIVS LHLEIYKFHV EDFSKVMGRT QKFLIVAIAT CNQLNILLNY GRLGLIYDEI 120
  121 ANLDLGIDKS SKNFCGKSHW WSFRLRLTLS IGLWMVIIIG VIPRLTLGRA GPFFHWVNQV 180
  181 LTQIILIMLQ LKGPEYCLFV LLVYELILRT RHVLEQLKDD LEDF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [225-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DCGARIQELC VTLKQNQLLI GRIWRLVDEI GAYFRWSMTL LFLYNGLTIL HVVNWAIIRS  60
   61 IDPNDCCQLN RLGSITFLSF NLLLTCFFSE CCVKTYNSIS YILHQIGCLP TAEEFQMLKM 120
  121 GLKEYILQMQ HLKLLFTCGG LFDINIKLFG GMLVTLCGYV IIIVQFKIQD FALIGYRQNT 180
  181 SDTS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle